PEACHi
Cluster -o- is enriched in the following gene classes
GeneSet DB Hit Count
Pathways_-_KEGGBioCarta.gmt.txt 3
Pathways_-_Reactome.gmt.txt 12
GO_-_Molecular_Function.gmt.txt 1
Chromosomal_Bands.gmt.txt 1
GeneSet Name GeneSet DB log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
BIOCARTA GSK3 PATHWAY Pathways_-_KEGGBioCarta.gmt.txt -2.5 0.04535 19.0 3.0 0.64
Downstream signal transduction Pathways_-_Reactome.gmt.txt -2.2 0.04546 50.0 5.0 1.7
GAB1 signalosome Pathways_-_Reactome.gmt.txt -3.2 0.01135 21.0 4.0 0.71
Influenza Infection Pathways_-_Reactome.gmt.txt -2.4 0.035 93.0 8.0 3.15
Influenza Life Cycle Pathways_-_Reactome.gmt.txt -2.5 0.02903 88.0 8.0 2.98
KEGG ENDOMETRIAL CANCER Pathways_-_KEGGBioCarta.gmt.txt -2.6 0.0404 29.0 4.0 0.98
KEGG PROSTATE CANCER Pathways_-_KEGGBioCarta.gmt.txt -2.5 0.04581 44.0 5.0 1.49
PI-3K cascade Pathways_-_Reactome.gmt.txt -3.2 0.01135 21.0 4.0 0.71
PI3K events in ERBB2 signaling Pathways_-_Reactome.gmt.txt -3.2 0.01135 21.0 4.0 0.71
PI3K events in ERBB4 signaling Pathways_-_Reactome.gmt.txt -3.2 0.01135 21.0 4.0 0.71
PI3K/AKT activation Pathways_-_Reactome.gmt.txt -3.9 0.00574 24.0 5.0 0.81
PIP3 activates AKT signaling Pathways_-_Reactome.gmt.txt -3.6 0.00878 18.0 4.0 0.61
RNA BINDING GO_-_Molecular_Function.gmt.txt -2.7 0.04515 135.0 11.0 4.58
Signaling by ERBB4 Pathways_-_Reactome.gmt.txt -2.1 0.04749 51.0 5.0 1.73
Transport of Mature Transcript to Cytoplasm Pathways_-_Reactome.gmt.txt -2.7 0.02198 39.0 5.0 1.32
Transport of Mature mRNA derived from an Intron-Containing Transcript Pathways_-_Reactome.gmt.txt -2.8 0.01969 38.0 5.0 1.29
chr15q21 Chromosomal_Bands.gmt.txt -2.1 0.0412 24.0 3.0 0.81
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000200543 7SK.31 -o-
ENSG00000108825 AARSD1 -o-
ENSG00000219039 AC005102.1 -o-
ENSG00000233762 AC007969.5 -o-
ENSG00000237024 AC010733.7 -o-
ENSG00000224858 AC011816.4 -o-
ENSG00000242735 AC018462.3 -o-
ENSG00000214073 AC018814.1 -o-
ENSG00000231169 AC025917.1 -o-
ENSG00000226915 AC068137.13 -o-
ENSG00000213370 AC079789.1 -o-
ENSG00000237758 AC084031.1 -o-
ENSG00000213261 AC093106.7 -o-
ENSG00000241800 AC114498.5 -o-
ENSG00000229145 ACTBP1 -o-
ENSG00000196839 ADA -o-
ENSG00000140470 ADAMTS17 -o-
ENSG00000231300 AF015726.1 -o-
ENSG00000160216 AGPAT3 -o-
ENSG00000155189 AGPAT5 -o-
ENSG00000158467 AHCYL2 -o-
ENSG00000247365 AL137120.1 -o-
ENSG00000241545 AL160274.1 -o-
ENSG00000247790 AL590431.2 -o-
ENSG00000236575 AL603926.4 -o-
ENSG00000227939 AL671883.2 -o-
ENSG00000213592 AP000662.9 -o-
ENSG00000185829 ARL17A -o-
ENSG00000138175 ARL3 -o-
ENSG00000135931 ARMC9 -o-
ENSG00000163466 ARPC2 -o-
ENSG00000174437 ATP2A2 -o-
ENSG00000152234 ATP5A1 -o-
ENSG00000179766 ATP8B5P -o-
ENSG00000123810 B9D2 -o-
ENSG00000110987 BCL7A -o-
ENSG00000133243 BTBD2 -o-
ENSG00000224820 BTF3P4 -o-
ENSG00000169679 BUB1 -o-
ENSG00000106245 BUD31 -o-
ENSG00000067365 C16orf68 -o-
ENSG00000167302 C17orf56 -o-
ENSG00000125843 C20orf29 -o-
ENSG00000162971 C2orf60 -o-
ENSG00000184924 C2orf79 -o-
ENSG00000186854 C2orf89 -o-
ENSG00000135387 CAPRIN1 -o-
ENSG00000198898 CAPZA2 -o-
ENSG00000154222 CC2D1B -o-
ENSG00000160799 CCDC12 -o-
ENSG00000134480 CCNH -o-
ENSG00000237190 CDKN2AIPNL -o-
ENSG00000141367 CLTC -o-
ENSG00000060138 CSDA -o-
ENSG00000213290 CTD-2192J16.12 -o-
ENSG00000238147 CTD-2518G19.1 -o-
ENSG00000153071 DAB2 -o-
ENSG00000137992 DBT -o-
ENSG00000165732 DDX21 -o-
ENSG00000174243 DDX23 -o-
ENSG00000111364 DDX55 -o-
ENSG00000158796 DEDD -o-
ENSG00000117682 DHDDS -o-
ENSG00000134815 DHX34 -o-
ENSG00000176124 DLEU1 -o-
ENSG00000105821 DNAJC2 -o-
ENSG00000112679 DUSP22 -o-
ENSG00000114942 EEF1B2 -o-
ENSG00000232472 EEF1B4 -o-
ENSG00000096093 EFHC1 -o-
ENSG00000108883 EFTUD2 -o-
ENSG00000084623 EIF3I -o-
ENSG00000161960 EIF4A1 -o-
ENSG00000235001 EIF4A1P2 -o-
ENSG00000236608 EIF4A1P6 -o-
ENSG00000235472 EIF4A1P7 -o-
ENSG00000159023 EPB41 -o-
ENSG00000236044 FABP5P2 -o-
ENSG00000234964 FABP5P7 -o-
ENSG00000115042 FAHD2A -o-
ENSG00000154124 FAM105B -o-
ENSG00000035141 FAM136A -o-
ENSG00000187741 FANCA -o-
ENSG00000170802 FOXN2 -o-
ENSG00000227376 FTH1P16 -o-
ENSG00000228232 GAPDHP1 -o-
ENSG00000108262 GIT1 -o-
ENSG00000069966 GNB5 -o-
ENSG00000224448 GS1-259H13.7 -o-
ENSG00000082701 GSK3B -o-
ENSG00000051620 HEBP2 -o-
ENSG00000205527 HSP90AB4P -o-
ENSG00000205141 HSP90B2P -o-
ENSG00000213430 HSPD1P1 -o-
ENSG00000161405 IKZF3 -o-
ENSG00000129351 ILF3 -o-
ENSG00000068383 INPP5A -o-
ENSG00000065150 IPO5 -o-
ENSG00000147166 ITGB1BP2 -o-
ENSG00000150477 KIAA1328 -o-
ENSG00000164944 KIAA1429 -o-
ENSG00000167613 LAIR1 -o-
ENSG00000213574 LDHAP5 -o-
ENSG00000138795 LEF1 -o-
ENSG00000140471 LINS -o-
ENSG00000041802 LSG1 -o-
ENSG00000227507 LTB -o-
ENSG00000112893 MAN2A1 -o-
ENSG00000050748 MAPK9 -o-
ENSG00000015479 MATR3 -o-
ENSG00000135679 MDM2 -o-
ENSG00000152944 MED21 -o-
ENSG00000037897 METTL1 -o-
ENSG00000102858 MGRN1 -o-
ENSG00000116151 MORN1 -o-
ENSG00000048544 MRPS10 -o-
ENSG00000124532 MRS2 -o-
ENSG00000099810 MTAP -o-
ENSG00000063601 MTMR1 -o-
ENSG00000100345 MYH9 -o-
ENSG00000133454 MYO18B -o-
ENSG00000111300 NAA25 -o-
ENSG00000130414 NDUFA10 -o-
ENSG00000140990 NDUFB10 -o-
ENSG00000151366 NDUFC2 -o-
ENSG00000141101 NOB1 -o-
ENSG00000223705 NSUN5P1 -o-
ENSG00000155561 NUP205 -o-
ENSG00000104904 OAZ1 -o-
ENSG00000109180 OCIAD1 -o-
ENSG00000132646 PCNA -o-
ENSG00000140992 PDPK1 -o-
ENSG00000059691 PET112L -o-
ENSG00000051382 PIK3CB -o-
ENSG00000169499 PLEKHA2 -o-
ENSG00000115946 PNO1 -o-
ENSG00000100479 POLE2 -o-
ENSG00000134283 PPHLN1 -o-
ENSG00000049769 PPP1R3F -o-
ENSG00000132356 PRKAA1 -o-
ENSG00000196504 PRPF40A -o-
ENSG00000215414 PSMA6P1 -o-
ENSG00000103769 RAB11A -o-
ENSG00000119396 RAB14 -o-
ENSG00000249965 RAC1P5 -o-
ENSG00000101146 RAE1 -o-
ENSG00000236603 RANP1 -o-
ENSG00000102317 RBM3 -o-
ENSG00000089682 RBM41 -o-
ENSG00000172602 RND1 -o-
ENSG00000173821 RNF213 -o-
ENSG00000207389 RNU1-4 -o-
ENSG00000213790 RP1-257I20.13 -o-
ENSG00000237211 RP1-30P20.1 -o-
ENSG00000226466 RP11-102H24.1 -o-
ENSG00000240489 RP11-111F10.2 -o-
ENSG00000227425 RP11-120D12.2 -o-
ENSG00000220924 RP11-148B6.4 -o-
ENSG00000235656 RP11-161I19.3 -o-
ENSG00000219149 RP11-214N16.2 -o-
ENSG00000236565 RP11-223F20.1 -o-
ENSG00000227034 RP11-234N17.1 -o-
ENSG00000227805 RP11-248J23.5 -o-
ENSG00000226790 RP11-272J7.5 -o-
ENSG00000213526 RP11-27G9.1 -o-
ENSG00000230620 RP11-367H5.7 -o-
ENSG00000213174 RP11-373E16.1 -o-
ENSG00000229927 RP11-38L15.6 -o-
ENSG00000241352 RP11-392P7.1 -o-
ENSG00000213864 RP11-404L6.1 -o-
ENSG00000241923 RP11-425I13.1 -o-
ENSG00000228312 RP11-455B2.3 -o-
ENSG00000217094 RP11-460H18.1 -o-
ENSG00000220793 RP11-473I1.1 -o-
ENSG00000240898 RP11-48B14.1 -o-
ENSG00000241556 RP11-490G8.1 -o-
ENSG00000244363 RP11-526L22.1 -o-
ENSG00000214244 RP11-546M4.3 -o-
ENSG00000225846 RP11-630D6.1 -o-
ENSG00000241941 RP11-631N16.1 -o-
ENSG00000230202 RP11-632C17__A.1 -o-
ENSG00000253341 RP11-730G20.2 -o-
ENSG00000215548 RP11-764K9.4 -o-
ENSG00000228205 RP11-778D9.4 -o-
ENSG00000239870 RP11-83M16.1 -o-
ENSG00000241877 RP11-84H6.1 -o-
ENSG00000240096 RP11-85G20.1 -o-
ENSG00000254183 RP11-953B20.2 -o-
ENSG00000216480 RP3-393E18.1 -o-
ENSG00000216657 RP3-406P24.1 -o-
ENSG00000185839 RP4-592A1.2 -o-
ENSG00000253204 RP5-1009N12.1 -o-
ENSG00000234518 RP5-837D10.2 -o-
ENSG00000215871 RP5-837M10.1 -o-
ENSG00000005175 RPAP3 -o-
ENSG00000230508 RPL19P21 -o-
ENSG00000229585 RPL21P44 -o-
ENSG00000163584 RPL22L1 -o-
ENSG00000100316 RPL3 -o-
ENSG00000244052 RPL5P24 -o-
ENSG00000148303 RPL7A -o-
ENSG00000164587 RPS14 -o-
ENSG00000105372 RPS19 -o-
ENSG00000175634 RPS6KB2 -o-
ENSG00000163602 RYBP -o-
ENSG00000142186 SCYL1 -o-
ENSG00000167985 SDHAF2 -o-
ENSG00000121542 SEC22A -o-
ENSG00000229897 SEPT7P7 -o-
ENSG00000183576 SETD3 -o-
ENSG00000171241 SHCBP1 -o-
ENSG00000231234 SKP1P1 -o-
ENSG00000114120 SLC25A36 -o-
ENSG00000164889 SLC4A2 -o-
ENSG00000252542 SNORD36C -o-
ENSG00000209418 SNORD64 -o-
ENSG00000136450 SRSF1 -o-
ENSG00000111786 SRSF9 -o-
ENSG00000008324 SS18L2 -o-
ENSG00000117155 SSX2IP -o-
ENSG00000100380 ST13 -o-
ENSG00000106868 SUSD1 -o-
ENSG00000120438 TCP1 -o-
ENSG00000198176 TFDP1 -o-
ENSG00000183684 THOC4 -o-
ENSG00000116001 TIA1 -o-
ENSG00000143155 TIPRL -o-
ENSG00000253304 TMEM200B -o-
ENSG00000164953 TMEM67 -o-
ENSG00000163472 TMEM79 -o-
ENSG00000120802 TMPO -o-
ENSG00000145901 TNIP1 -o-
ENSG00000197579 TOPORS -o-
ENSG00000187688 TRPV2 -o-
ENSG00000165409 TSHR -o-
ENSG00000119685 TTLL5 -o-
ENSG00000086712 TXLNG -o-
ENSG00000105397 TYK2 -o-
ENSG00000033178 UBA6 -o-
ENSG00000077721 UBE2A -o-
ENSG00000107341 UBE2R2 -o-
ENSG00000140553 UNC45A -o-
ENSG00000143258 USP21 -o-
ENSG00000115464 USP34 -o-
ENSG00000247746 USP51 -o-
ENSG00000164338 UTP15 -o-
ENSG00000165637 VDAC2 -o-
ENSG00000095787 WAC -o-
ENSG00000142784 WDTC1 -o-
ENSG00000123124 WWP1 -o-
ENSG00000079246 XRCC5 -o-
ENSG00000141664 ZCCHC2 -o-
ENSG00000196378 ZNF34 -o-
ENSG00000113761 ZNF346 -o-
ENSG00000198464 ZNF480 -o-
ENSG00000204946 ZNF783 -o-
hsa-miR-129-3p hsa-miR-129-3p -o-
hsa-miR-142-5p hsa-miR-142-5p -o-
hsa-miR-15b* hsa-miR-15b* -o-
hsa-miR-181a hsa-miR-181a -o-
hsa-miR-181b hsa-miR-181b -o-
hsa-miR-181d hsa-miR-181d -o-
hsa-miR-18a* hsa-miR-18a* -o-
hsa-miR-3074-3p hsa-miR-3074-3p -o-
hsa-miR-320d hsa-miR-320d -o-
hsa-miR-502-3p hsa-miR-502-3p -o-
hsa-miR-502-5p hsa-miR-502-5p -o-
hsa-miR-548a-3p hsa-miR-548a-3p -o-
hsa-miR-7 hsa-miR-7 -o-
hsa-miR-7-1* hsa-miR-7-1* -o-
hsa-miR-93 hsa-miR-93 -o-