PEACHi
GeneSet KEGG_PROSTATE_CANCER (Pathways_-_KEGGBioCarta.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
-o- -2.5 0.04581 44.0 5.0 1.49
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000142208 AKT1 ---
ENSG00000105221 AKT2 o--a
ENSG00000117020 AKT3 o++b
ENSG00000078061 ARAF o--a
ENSG00000128272 ATF4 o--b
ENSG00000171791 BCL2 NonAssociatedWithProgression
ENSG00000157764 BRAF oo-
ENSG00000105173 CCNE1 o--b
ENSG00000175305 CCNE2 NonAssociatedWithProgression
ENSG00000123374 CDK2 oo-
ENSG00000124762 CDKN1A oo-
ENSG00000111276 CDKN1B +o+
ENSG00000213341 CHUK NonAssociatedWithProgression
ENSG00000118260 CREB1 o+-
ENSG00000107175 CREB3 NonAssociatedWithProgression
ENSG00000143578 CREB3L4 o--a
ENSG00000146592 CREB5 +oo
ENSG00000005339 CREBBP NonAssociatedWithProgression
ENSG00000168036 CTNNB1 o--b
ENSG00000101412 E2F1 o--b
ENSG00000007968 E2F2 o--a
ENSG00000112242 E2F3 NonAssociatedWithProgression
ENSG00000100393 EP300 o++b
ENSG00000077782 FGFR1 o++a
ENSG00000177885 GRB2 NonAssociatedWithProgression
ENSG00000082701 GSK3B -o-
ENSG00000084207 GSTP1 o--a
ENSG00000174775 HRAS o--b
ENSG00000080824 HSP90AA1 NonAssociatedWithProgression
ENSG00000096384 HSP90AB1 o--b
ENSG00000166598 HSP90B1 NonAssociatedWithProgression
ENSG00000140443 IGF1R o++b
ENSG00000104365 IKBKB o++a
ENSG00000073009 IKBKG --o
ENSG00000133703 KRAS o+o
ENSG00000138795 LEF1 -o-
ENSG00000169032 MAP2K1 NonAssociatedWithProgression
ENSG00000126934 MAP2K2 o--a
ENSG00000100030 MAPK1 NonAssociatedWithProgression
ENSG00000102882 MAPK3 o--b
ENSG00000135679 MDM2 -o-
ENSG00000198793 MTOR NonAssociatedWithProgression
ENSG00000109320 NFKB1 o++a
ENSG00000100906 NFKBIA o-o
ENSG00000213281 NRAS o--b
ENSG00000140992 PDPK1 -o-
ENSG00000121879 PIK3CA +-o
ENSG00000051382 PIK3CB -o-
ENSG00000171608 PIK3CD o++a
ENSG00000105851 PIK3CG o++b
ENSG00000145675 PIK3R1 o--a
ENSG00000105647 PIK3R2 o--a
ENSG00000117461 PIK3R3 NonAssociatedWithProgression
ENSG00000171862 PTEN NonAssociatedWithProgression
ENSG00000132155 RAF1 NonAssociatedWithProgression
ENSG00000139687 RB1 NonAssociatedWithProgression
ENSG00000173039 RELA o--a
ENSG00000115904 SOS1 -+o
ENSG00000100485 SOS2 NonAssociatedWithProgression
ENSG00000081059 TCF7 o+-
ENSG00000148737 TCF7L2 NonAssociatedWithProgression
ENSG00000141510 TP53 o--a