| AAAGGGA,MIR-204,MIR-211 |
TFmiRNA_Targets.gmt.txt |
-3.7 |
0.03979 |
87.0 |
7.0 |
1.63 |
| CELL MIGRATION |
GO_-_Biological_Process.gmt.txt |
-3.0 |
0.04713 |
25.0 |
3.0 |
0.47 |
| Cell surface interactions at the vascular wall |
Pathways_-_Reactome.gmt.txt |
-2.4 |
0.03515 |
36.0 |
3.0 |
0.68 |
| Cholesterol biosynthesis |
Pathways_-_Reactome.gmt.txt |
-5.2 |
0.00183 |
15.0 |
4.0 |
0.28 |
| HYDROLASE ACTIVITY ACTING ON ESTER BONDS |
GO_-_Molecular_Function.gmt.txt |
-3.2 |
0.03238 |
103.0 |
7.0 |
1.93 |
| KEGG ADHERENS JUNCTION |
Pathways_-_KEGGBioCarta.gmt.txt |
-3.5 |
0.01799 |
33.0 |
4.0 |
0.62 |
| KEGG PATHOGENIC ESCHERICHIA COLI INFECTION |
Pathways_-_KEGGBioCarta.gmt.txt |
-2.4 |
0.0481 |
35.0 |
3.0 |
0.66 |
| PHOSPHOPROTEIN PHOSPHATASE ACTIVITY |
GO_-_Molecular_Function.gmt.txt |
-3.2 |
0.03238 |
38.0 |
4.0 |
0.71 |
| PHOSPHORIC ESTER HYDROLASE ACTIVITY |
GO_-_Molecular_Function.gmt.txt |
-3.0 |
0.03452 |
61.0 |
5.0 |
1.15 |
| PHOSPHORIC MONOESTER HYDROLASE ACTIVITY |
GO_-_Molecular_Function.gmt.txt |
-3.4 |
0.03238 |
51.0 |
5.0 |
0.96 |
| PROTEIN TYROSINE PHOSPHATASE ACTIVITY |
GO_-_Molecular_Function.gmt.txt |
-4.4 |
0.0108 |
22.0 |
4.0 |
0.41 |
| SIG PIP3 SIGNALING IN CARDIAC MYOCTES |
Pathways_-_KEGGBioCarta.gmt.txt |
-2.5 |
0.0439 |
33.0 |
3.0 |
0.62 |
| SOLUBLE FRACTION |
GO_-_Cellular_Component.gmt.txt |
-5.2 |
8.6E-4 |
54.0 |
7.0 |
1.01 |
| TTAYRTAA V$E4BP4 01 |
TFmiRNA_Targets.gmt.txt |
-3.8 |
0.03976 |
63.0 |
6.0 |
1.18 |
| V$CREBP1 01 |
TFmiRNA_Targets.gmt.txt |
-4.4 |
0.01708 |
50.0 |
6.0 |
0.94 |
| V$E4BP4 01 |
TFmiRNA_Targets.gmt.txt |
-4.7 |
0.0115 |
62.0 |
7.0 |
1.16 |
| V$HLF 01 |
TFmiRNA_Targets.gmt.txt |
-4.0 |
0.02587 |
77.0 |
7.0 |
1.45 |
| chr14q24 |
Chromosomal_Bands.gmt.txt |
-2.5 |
0.02595 |
32.0 |
3.0 |
0.6 |
| chr7p15 |
Chromosomal_Bands.gmt.txt |
-3.4 |
0.0089 |
19.0 |
3.0 |
0.36 |
| hsa-miR-125a-5p targets |
TarBase_6beta.gmt.txt |
-2.8 |
0.04376 |
27.0 |
3.0 |
0.51 |
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at
three phases of the viral life cycle, namely reverse transcription, integration, and late phase.
Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering.
Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).