GeneSet hsa-miR-125a-5p_targets (TarBase_6beta.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
+oo -2.8 0.04376 27.0 3.0 0.51
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000162704 ARPC5 o--b
ENSG00000119787 ATL2 o--b
ENSG00000124788 ATXN1 oo+
ENSG00000138867 C22orf13 o--a
ENSG00000157224 CLDN12 +o+
ENSG00000110880 CORO1C +oo
ENSG00000146592 CREB5 +oo
ENSG00000167193 CRK o+o
ENSG00000108861 DUSP3 o-+
ENSG00000165891 E2F7 NonAssociatedWithProgression
ENSG00000187840 EIF4EBP1 o--b
ENSG00000099219 ERMP1 o+-
ENSG00000107643 MAPK8 o+o
ENSG00000048162 NOP16 o--b
ENSG00000174738 NR1D2 NonAssociatedWithProgression
ENSG00000162600 OMA1 o++b
ENSG00000081087 OSTM1 -+o
ENSG00000110218 PANX1 +oo
ENSG00000124171 PARD6B -+o
ENSG00000140992 PDPK1 -o-
ENSG00000055917 PUM2 o-o
ENSG00000146587 RBAK NonAssociatedWithProgression
ENSG00000134453 RBM17 NonAssociatedWithProgression
ENSG00000105281 SLC1A5 o--b
ENSG00000114520 SNX4 NonAssociatedWithProgression
ENSG00000103363 TCEB2 o--a
ENSG00000091947 TMEM101 oo+
ENSG00000105576 TNPO2 o--a
ENSG00000176105 YES1 +-o
ENSG00000180667 YOD1 o--b
ENSG00000205189 ZBTB10 NonAssociatedWithProgression
ENSG00000104231 ZFAND1 +o+
ENSG00000152443 ZNF776 o++b