PEACHi
GeneSet V$HLF_01 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
+oo -4.0 0.02587 77.0 7.0 1.45
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000068366 ACSL4 o+-
ENSG00000101126 ADNP NonAssociatedWithProgression
ENSG00000182287 AP1S2 -+o
ENSG00000049618 ARID1B o+o
ENSG00000113369 ARRDC3 NonAssociatedWithProgression
ENSG00000156802 ATAD2 NonAssociatedWithProgression
ENSG00000095739 BAMBI NonAssociatedWithProgression
ENSG00000113916 BCL6 +-o
ENSG00000156030 C14orf43 o--a
ENSG00000134986 C5orf13 NonAssociatedWithProgression
ENSG00000198668 CALM1 NonAssociatedWithProgression
ENSG00000147044 CASK o++b
ENSG00000070831 CDC42 +oo
ENSG00000132964 CDK8 o+o
ENSG00000123080 CDKN2C o-o
ENSG00000153046 CDYL o--a
ENSG00000173575 CHD2 o--b
ENSG00000128656 CHN1 -+o
ENSG00000074054 CLASP1 NonAssociatedWithProgression
ENSG00000171365 CLCN5 -+o
ENSG00000169504 CLIC4 +oo
ENSG00000204291 COL15A1 +oo
ENSG00000146592 CREB5 +oo
ENSG00000213923 CSNK1E o--b
ENSG00000144579 CTDSP1 o--a
ENSG00000109861 CTSC o++a
ENSG00000175197 DDIT3 +-o
ENSG00000108654 DDX5 NonAssociatedWithProgression
ENSG00000069345 DNAJA2 o-o
ENSG00000161326 DUSP14 o++b
ENSG00000167658 EEF2 oo-
ENSG00000126070 EIF2C3 o+o
ENSG00000161960 EIF4A1 -o-
ENSG00000143924 EML4 oo-
ENSG00000143420 ENSA oo-
ENSG00000159023 EPB41 -o-
ENSG00000105722 ERF ---
ENSG00000110429 FBXO3 o+o
ENSG00000109670 FBXW7 o+-
ENSG00000137478 FCHSD2 NonAssociatedWithProgression
ENSG00000187239 FNBP1 o--b
ENSG00000114861 FOXP1 oo-
ENSG00000172432 GTPBP2 o--a
ENSG00000051108 HERPUD1 +oo
ENSG00000127124 HIVEP3 +-o
ENSG00000170144 HNRNPA3 ---
ENSG00000113520 IL4 NonAssociatedWithProgression
ENSG00000153487 ING1 NonAssociatedWithProgression
ENSG00000040933 INPP4A NonAssociatedWithProgression
ENSG00000170604 IRF2BP1 ---
ENSG00000122550 KLHL7 o+o
ENSG00000161904 LEMD2 o--a
ENSG00000047849 MAP4 o-+
ENSG00000139793 MBNL2 NonAssociatedWithProgression
ENSG00000169057 MECP2 o--a
ENSG00000134138 MEIS2 o++b
ENSG00000099875 MKNK2 o--b
ENSG00000108852 MPP2 NonAssociatedWithProgression
ENSG00000105926 MPP6 o--b
ENSG00000011028 MRC2 o++a
ENSG00000165030 NFIL3 -+o
ENSG00000122126 OCRL o++a
ENSG00000197111 PCBP2 o--a
ENSG00000241360 PDXP o--a
ENSG00000139946 PELI2 +oo
ENSG00000070087 PFN2 NonAssociatedWithProgression
ENSG00000173889 PHC3 o+o
ENSG00000145675 PIK3R1 o--a
ENSG00000143398 PIP5K1A o-+
ENSG00000181690 PLAG1 oo-
ENSG00000182621 PLCB1 -+o
ENSG00000176903 PNMA1 +oo
ENSG00000143442 POGZ NonAssociatedWithProgression
ENSG00000152192 POU4F1 oo+
ENSG00000162409 PRKAA2 o++a
ENSG00000181929 PRKAG1 ---
ENSG00000008853 RHOBTB2 NonAssociatedWithProgression
ENSG00000069667 RORA NonAssociatedWithProgression
ENSG00000177189 RPS6KA3 NonAssociatedWithProgression
ENSG00000182199 SHMT2 o--a
ENSG00000163104 SMARCAD1 o+o
ENSG00000187678 SPRY4 +-o
ENSG00000198911 SREBF2 ---
ENSG00000125834 STK35 ---
ENSG00000116030 SUMO1 NonAssociatedWithProgression
ENSG00000132718 SYT11 NonAssociatedWithProgression
ENSG00000112561 TFEB ---
ENSG00000141232 TOB1 NonAssociatedWithProgression
ENSG00000198900 TOP1 o+o
ENSG00000213689 TREX1 o--b
ENSG00000182247 UBE2E2 o--a
ENSG00000124486 USP9X +-o
ENSG00000130227 XPO7 o--b
ENSG00000170027 YWHAG o+-
ENSG00000175048 ZDHHC14 ---
ENSG00000156599 ZDHHC5 o--b
ENSG00000157077 ZFYVE9 oo+
ENSG00000179456 ZNF238 o-o
ENSG00000173276 ZNF295 oo-