PEACHi
GeneSet V$E4BP4_01 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
+oo -4.7 0.0115 62.0 7.0 1.16
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000068366 ACSL4 o+-
ENSG00000101126 ADNP NonAssociatedWithProgression
ENSG00000147853 AK3 o--b
ENSG00000182287 AP1S2 -+o
ENSG00000049618 ARID1B o+o
ENSG00000143437 ARNT o++b
ENSG00000113369 ARRDC3 NonAssociatedWithProgression
ENSG00000162772 ATF3 +-o
ENSG00000179774 ATOH7 o++a
ENSG00000134986 C5orf13 NonAssociatedWithProgression
ENSG00000196642 C9orf86 o--b
ENSG00000198668 CALM1 NonAssociatedWithProgression
ENSG00000143933 CALM2 o--a
ENSG00000070831 CDC42 +oo
ENSG00000132964 CDK8 o+o
ENSG00000153046 CDYL o--a
ENSG00000134255 CEPT1 o++b
ENSG00000109220 CHIC2 o++b
ENSG00000074054 CLASP1 NonAssociatedWithProgression
ENSG00000171365 CLCN5 -+o
ENSG00000171603 CLSTN1 NonAssociatedWithProgression
ENSG00000204291 COL15A1 +oo
ENSG00000146592 CREB5 +oo
ENSG00000213923 CSNK1E o--b
ENSG00000108654 DDX5 NonAssociatedWithProgression
ENSG00000069345 DNAJA2 o-o
ENSG00000167658 EEF2 oo-
ENSG00000126070 EIF2C3 o+o
ENSG00000143420 ENSA oo-
ENSG00000100393 EP300 o++b
ENSG00000159023 EPB41 -o-
ENSG00000105722 ERF ---
ENSG00000244405 ETV5 +-o
ENSG00000110429 FBXO3 o+o
ENSG00000109670 FBXW7 o+-
ENSG00000187239 FNBP1 o--b
ENSG00000034713 GABARAPL2 -+o
ENSG00000163041 H3F3A NonAssociatedWithProgression
ENSG00000051108 HERPUD1 +oo
ENSG00000127124 HIVEP3 +-o
ENSG00000144381 HSPD1 o--b
ENSG00000115541 HSPE1 o+-
ENSG00000106348 IMPDH1 o--a
ENSG00000040933 INPP4A NonAssociatedWithProgression
ENSG00000170604 IRF2BP1 ---
ENSG00000171988 JMJD1C +oo
ENSG00000034152 MAP2K3 ---
ENSG00000047849 MAP4 o-+
ENSG00000169057 MECP2 o--a
ENSG00000108852 MPP2 NonAssociatedWithProgression
ENSG00000072415 MPP5 NonAssociatedWithProgression
ENSG00000105926 MPP6 o--b
ENSG00000165030 NFIL3 -+o
ENSG00000100503 NIN oo+
ENSG00000152465 NMT2 NonAssociatedWithProgression
ENSG00000147162 OGT o-o
ENSG00000241360 PDXP o--a
ENSG00000139946 PELI2 +oo
ENSG00000102144 PGK1 NonAssociatedWithProgression
ENSG00000145675 PIK3R1 o--a
ENSG00000182621 PLCB1 -+o
ENSG00000176903 PNMA1 +oo
ENSG00000143442 POGZ NonAssociatedWithProgression
ENSG00000136480 POLG2 NonAssociatedWithProgression
ENSG00000131626 PPFIA1 NonAssociatedWithProgression
ENSG00000162409 PRKAA2 o++a
ENSG00000171867 PRNP NonAssociatedWithProgression
ENSG00000169228 RAB24 o-+
ENSG00000182732 RGS6 o++a
ENSG00000008853 RHOBTB2 NonAssociatedWithProgression
ENSG00000177189 RPS6KA3 NonAssociatedWithProgression
ENSG00000158480 SPATA2 NonAssociatedWithProgression
ENSG00000198911 SREBF2 ---
ENSG00000116030 SUMO1 NonAssociatedWithProgression
ENSG00000132718 SYT11 NonAssociatedWithProgression
ENSG00000172660 TAF15 o--b
ENSG00000112561 TFEB ---
ENSG00000144560 VGLL4 o--a
ENSG00000166483 WEE1 NonAssociatedWithProgression
ENSG00000130227 XPO7 o--b
ENSG00000185728 YTHDF3 o--b
ENSG00000170027 YWHAG o+-
ENSG00000175048 ZDHHC14 ---
ENSG00000156599 ZDHHC5 o--b
ENSG00000198081 ZFP161 NonAssociatedWithProgression
ENSG00000178764 ZHX2 NonAssociatedWithProgression
ENSG00000173276 ZNF295 oo-