PEACHi
GeneSet SOLUBLE_FRACTION (GO_-_Cellular_Component.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
+oo -5.2 8.6E-4 54.0 7.0 1.01
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000090861 AARS ---
ENSG00000136754 ABI1 NonAssociatedWithProgression
ENSG00000143727 ACP1 +oo
ENSG00000148926 ADM +oo
ENSG00000173020 ADRBK1 o--b
ENSG00000112294 ALDH5A1 o++b
ENSG00000182718 ANXA2 o++a
ENSG00000134262 AP4B1 NonAssociatedWithProgression
ENSG00000198356 ASNA1 o--b
ENSG00000110619 CARS +oo
ENSG00000173992 CCS NonAssociatedWithProgression
ENSG00000196352 CD55 o+o
ENSG00000213719 CLIC1 o--b
ENSG00000169504 CLIC4 +oo
ENSG00000093010 COMT NonAssociatedWithProgression
ENSG00000103426 CORO7 ---
ENSG00000241563 CORT NonAssociatedWithProgression
ENSG00000175215 CTDSP2 o-+
ENSG00000085733 CTTN o--b
ENSG00000115866 DARS NonAssociatedWithProgression
ENSG00000139318 DUSP6 NonAssociatedWithProgression
ENSG00000136628 EPRS o--b
ENSG00000049167 ERCC8 -+o
ENSG00000145982 FARS2 ---
ENSG00000179115 FARSA o--a
ENSG00000026103 FAS NonAssociatedWithProgression
ENSG00000140092 FBLN5 +o+
ENSG00000090554 FLT3LG +o+
ENSG00000102081 FMR1 o+-
ENSG00000106105 GARS +-o
ENSG00000023909 GCLM o+o
ENSG00000152904 GGPS1 NonAssociatedWithProgression
ENSG00000123159 GIPC1 o--b
ENSG00000147437 GNRH1 o+o
ENSG00000198873 GRK5 +oo
ENSG00000143575 HAX1 ---
ENSG00000112972 HMGCS1 oo-
ENSG00000107521 HPS1 NonAssociatedWithProgression
ENSG00000196305 IARS o--a
ENSG00000119912 IDE -+o
ENSG00000113141 IK o--a
ENSG00000111536 IL26 +o+
ENSG00000205339 IPO7 NonAssociatedWithProgression
ENSG00000173801 JUP o-o
ENSG00000065427 KARS o-o
ENSG00000168067 MAP4K2 ---
ENSG00000148297 MED22 o-o
ENSG00000134440 NARS o++b
ENSG00000197696 NMB o--a
ENSG00000139574 NPFF NonAssociatedWithProgression
ENSG00000035681 NSMAF o--a
ENSG00000135506 OS9 o++b
ENSG00000161217 PCYT1A NonAssociatedWithProgression
ENSG00000065989 PDE4A ---
ENSG00000204619 PPP1R11 o--b
ENSG00000119383 PPP2R4 ---
ENSG00000127947 PTPN12 +oo
ENSG00000115839 RAB3GAP1 o--a
ENSG00000118873 RAB3GAP2 ---
ENSG00000100401 RANGAP1 o-o
ENSG00000113643 RARS NonAssociatedWithProgression
ENSG00000027869 SH2D2A o--b
ENSG00000111450 STX2 +-o
ENSG00000113407 TARS NonAssociatedWithProgression
ENSG00000129566 TEP1 +o+
ENSG00000166340 TPP1 o--a
ENSG00000104517 UBR5 +oo
ENSG00000109103 UNC119 --o
ENSG00000140105 WARS NonAssociatedWithProgression
ENSG00000112761 WISP3 NonAssociatedWithProgression
ENSG00000134684 YARS o--b