PEACHi
GeneSet AAAGGGA,MIR-204,MIR-211 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
+oo -3.7 0.03979 87.0 7.0 1.63
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000121057 AKAP1 o--b
ENSG00000122359 ANXA11 NonAssociatedWithProgression
ENSG00000106367 AP1S1 ---
ENSG00000185009 AP3M1 o--a
ENSG00000117362 APH1A o--a
ENSG00000095139 ARCN1 o-o
ENSG00000134108 ARL8B +oo
ENSG00000115966 ATF2 NonAssociatedWithProgression
ENSG00000070961 ATP2B1 +-o
ENSG00000115307 AUP1 ---
ENSG00000076108 BAZ2A o++b
ENSG00000127152 BCL11B NonAssociatedWithProgression
ENSG00000171791 BCL2 NonAssociatedWithProgression
ENSG00000116128 BCL9 NonAssociatedWithProgression
ENSG00000186174 BCL9L o--b
ENSG00000141867 BRD4 oo-
ENSG00000096070 BRPF3 o-+
ENSG00000170222 C17orf48 o-+
ENSG00000082258 CCNT2 o-o
ENSG00000101224 CDC25B o--a
ENSG00000070831 CDC42 +oo
ENSG00000008300 CELSR3 ---
ENSG00000106069 CHN2 o++b
ENSG00000110880 CORO1C +oo
ENSG00000178741 COX5A o--a
ENSG00000108582 CPD o++a
ENSG00000146592 CREB5 +oo
ENSG00000099942 CRKL o--b
ENSG00000173402 DAG1 o--a
ENSG00000151208 DLG5 o--b
ENSG00000135164 DMTF1 NonAssociatedWithProgression
ENSG00000138246 DNAJC13 NonAssociatedWithProgression
ENSG00000079805 DNM2 o--a
ENSG00000135144 DTX1 o--b
ENSG00000161202 DVL3 o--a
ENSG00000157540 DYRK1A NonAssociatedWithProgression
ENSG00000134109 EDEM1 o--b
ENSG00000124802 EEF1E1 NonAssociatedWithProgression
ENSG00000134698 EIF2C4 +o+
ENSG00000109381 ELF2 NonAssociatedWithProgression
ENSG00000106123 EPHB6 o--b
ENSG00000109670 FBXW7 o+-
ENSG00000179431 FJX1 ---
ENSG00000165219 GAPVD1 NonAssociatedWithProgression
ENSG00000169635 HIC2 o--a
ENSG00000149948 HMGA2 oo-
ENSG00000168172 HOOK3 o--b
ENSG00000153936 HS2ST1 +o+
ENSG00000197081 IGF2R +-o
ENSG00000111653 ING4 o+-
ENSG00000150995 ITPR1 o++b
ENSG00000134504 KCTD1 o++a
ENSG00000121774 KHDRBS1 NonAssociatedWithProgression
ENSG00000118922 KLF12 o+o
ENSG00000171492 LRRC8D o--b
ENSG00000140941 MAP1LC3B NonAssociatedWithProgression
ENSG00000198909 MAP3K3 o-+
ENSG00000152601 MBNL1 NonAssociatedWithProgression
ENSG00000164024 METAP1 o--b
ENSG00000171843 MLLT3 oo+
ENSG00000132313 MRPL35 o--a
ENSG00000172590 MRPL52 oo+
ENSG00000172915 NBEA -+o
ENSG00000111912 NCOA7 oo+
ENSG00000113580 NR3C1 o--a
ENSG00000185624 P4HB o--a
ENSG00000116273 PHF13 NonAssociatedWithProgression
ENSG00000181690 PLAG1 oo-
ENSG00000221823 PPP3R1 +oo
ENSG00000116731 PRDM2 -oo
ENSG00000134186 PRPF38B ---
ENSG00000084733 RAB10 NonAssociatedWithProgression
ENSG00000119396 RAB14 -o-
ENSG00000138069 RAB1A o++b
ENSG00000123728 RAP2C o++b
ENSG00000142599 RERE o++b
ENSG00000164292 RHOBTB3 NonAssociatedWithProgression
ENSG00000126858 RHOT1 NonAssociatedWithProgression
ENSG00000164327 RICTOR o--b
ENSG00000177189 RPS6KA3 NonAssociatedWithProgression
ENSG00000100784 RPS6KA5 NonAssociatedWithProgression
ENSG00000124813 RUNX2 +oo
ENSG00000119042 SATB2 -+o
ENSG00000150961 SEC24D NonAssociatedWithProgression
ENSG00000065665 SEC61A2 +o+
ENSG00000132824 SERINC3 oo-
ENSG00000115524 SF3B1 o++b
ENSG00000160691 SHC1 o--a
ENSG00000169375 SIN3A o--b
ENSG00000096717 SIRT1 +-o
ENSG00000157800 SLC37A3 o++a
ENSG00000137776 SLTM NonAssociatedWithProgression
ENSG00000124766 SOX4 +oo
ENSG00000121067 SPOP o--b
ENSG00000149136 SSRP1 o--b
ENSG00000004866 ST7 NonAssociatedWithProgression
ENSG00000164506 STXBP5 -+o
ENSG00000188612 SUMO2 NonAssociatedWithProgression
ENSG00000148835 TAF5 o--a
ENSG00000140262 TCF12 o--a
ENSG00000163513 TGFBR2 +o+
ENSG00000112697 TMEM30A NonAssociatedWithProgression
ENSG00000100354 TNRC6B o+o
ENSG00000153827 TRIP12 NonAssociatedWithProgression
ENSG00000107341 UBE2R2 -o-
ENSG00000147854 UHRF2 o-o
ENSG00000166483 WEE1 NonAssociatedWithProgression
ENSG00000114127 XRN1 o++b
ENSG00000185728 YTHDF3 o--b
ENSG00000170027 YWHAG o+-
ENSG00000186908 ZDHHC17 o-+
ENSG00000186660 ZFP91 +-o
ENSG00000131381 ZFYVE20 NonAssociatedWithProgression
ENSG00000170265 ZNF282 o--b
ENSG00000198026 ZNF335 NonAssociatedWithProgression
ENSG00000102935 ZNF423 o--b