PEACHi
GeneSet hsa-mir-30_targets (TarBase_6beta.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
--o -3.3 0.01925 46.0 6.0 1.41
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000159322 ADPGK NonAssociatedWithProgression
ENSG00000196961 AP2A1 ---
ENSG00000174437 ATP2A2 -o-
ENSG00000085224 ATRX -oo
ENSG00000143443 C1orf56 oo+
ENSG00000067955 CBFB o--a
ENSG00000112877 CEP72 +o+
ENSG00000153922 CHD1 o--b
ENSG00000116641 DOCK7 o++a
ENSG00000179387 ELMOD2 o++b
ENSG00000109536 FRG1 o-+
ENSG00000141429 GALNT1 NonAssociatedWithProgression
ENSG00000109586 GALNT7 o--b
ENSG00000114353 GNAI2 --o
ENSG00000099783 HNRNPM o-o
ENSG00000006652 IFRD1 NonAssociatedWithProgression
ENSG00000177606 JUN NonAssociatedWithProgression
ENSG00000176619 LMNB2 NonAssociatedWithProgression
ENSG00000171488 LRRC8C o++b
ENSG00000168906 MAT2A ---
ENSG00000152601 MBNL1 NonAssociatedWithProgression
ENSG00000129255 MPDU1 o--b
ENSG00000134265 NAPG o-+
ENSG00000115053 NCL o--b
ENSG00000122643 NT5C3 NonAssociatedWithProgression
ENSG00000104805 NUCB1 --o
ENSG00000108256 NUFIP2 --o
ENSG00000079739 PGM1 --o
ENSG00000119383 PPP2R4 ---
ENSG00000138814 PPP3CA o++b
ENSG00000221823 PPP3R1 +oo
ENSG00000196504 PRPF40A -o-
ENSG00000152894 PTPRK NonAssociatedWithProgression
ENSG00000187024 PTRH1 --o
ENSG00000119318 RAD23B oo-
ENSG00000153250 RBMS1 o++b
ENSG00000144580 RQCD1 NonAssociatedWithProgression
ENSG00000100934 SEC23A o++b
ENSG00000008952 SEC62 o--a
ENSG00000111371 SLC38A1 +-o
ENSG00000134294 SLC38A2 oo-
ENSG00000033867 SLC4A7 oo+
ENSG00000139514 SLC7A1 +-o
ENSG00000151012 SLC7A11 +oo
ENSG00000065054 SLC9A3R2 -oo
ENSG00000115808 STRN o+o
ENSG00000079950 STX7 o+o
ENSG00000008282 SYPL1 o+-
ENSG00000143183 TMCO1 o+o
ENSG00000170348 TMED10 --o
ENSG00000086598 TMED2 +o+
ENSG00000166557 TMED3 o-o
ENSG00000166471 TMEM41B o-+
ENSG00000116209 TMEM59 NonAssociatedWithProgression
ENSG00000103978 TMEM87A NonAssociatedWithProgression
ENSG00000120889 TNFRSF10B o+o
ENSG00000117143 UAP1 o++a