PEACHi
GeneSet hsa-miR-98_targets (TarBase_6beta.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--b -4.4 0.00415 240.0 55.0 33.16
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000149313 AASDHPPT o+o
ENSG00000114770 ABCC5 NonAssociatedWithProgression
ENSG00000204574 ABCF1 o--b
ENSG00000196839 ADA -o-
ENSG00000018510 AGPS ---
ENSG00000112297 AIM1 +o+
ENSG00000004455 AK2 o--a
ENSG00000196139 AKR1C3 +o+
ENSG00000214160 ALG3 o--a
ENSG00000159063 ALG8 o--a
ENSG00000167522 ANKRD11 o--b
ENSG00000095139 ARCN1 o-o
ENSG00000117713 ARID1A o--b
ENSG00000153317 ASAP1 o++b
ENSG00000112249 ASCC3 NonAssociatedWithProgression
ENSG00000169093 ASMTL o-o
ENSG00000198925 ATG9A o--a
ENSG00000133657 ATP13A3 NonAssociatedWithProgression
ENSG00000136888 ATP6V1G1 o+-
ENSG00000123191 ATP7B o++b
ENSG00000169857 AVEN NonAssociatedWithProgression
ENSG00000158850 B4GALT3 o--a
ENSG00000198604 BAZ1A NonAssociatedWithProgression
ENSG00000116128 BCL9 NonAssociatedWithProgression
ENSG00000103429 BFAR o++b
ENSG00000147439 BIN3 o--b
ENSG00000023445 BIRC3 o++a
ENSG00000138756 BMP2K +-o
ENSG00000132640 BTBD3 o+o
ENSG00000112763 BTN2A1 o+o
ENSG00000119965 C10orf88 NonAssociatedWithProgression
ENSG00000150776 C11orf57 +-o
ENSG00000120685 C13orf23 o--a
ENSG00000106392 C1GALT1 o++b
ENSG00000117597 C1orf107 NonAssociatedWithProgression
ENSG00000134986 C5orf13 NonAssociatedWithProgression
ENSG00000181751 C5orf30 NonAssociatedWithProgression
ENSG00000146476 C6orf211 NonAssociatedWithProgression
ENSG00000106603 C7orf44 NonAssociatedWithProgression
ENSG00000107159 CA9 ---
ENSG00000171302 CANT1 o--b
ENSG00000131236 CAP1 o--a
ENSG00000145386 CCNA2 o--b
ENSG00000162063 CCNF o--a
ENSG00000107443 CCNJ o--b
ENSG00000117335 CD46 NonAssociatedWithProgression
ENSG00000094880 CDC23 NonAssociatedWithProgression
ENSG00000164045 CDC25A o--b
ENSG00000099804 CDC34 o--b
ENSG00000134058 CDK7 o+o
ENSG00000145996 CDKAL1 -oo
ENSG00000124762 CDKN1A oo-
ENSG00000111276 CDKN1B +o+
ENSG00000153922 CHD1 o--b
ENSG00000111642 CHD4 o--b
ENSG00000171316 CHD7 o++b
ENSG00000203668 CHML o++b
ENSG00000171310 CHST11 NonAssociatedWithProgression
ENSG00000113282 CLINT1 NonAssociatedWithProgression
ENSG00000172409 CLP1 o--a
ENSG00000100528 CNIH NonAssociatedWithProgression
ENSG00000164597 COG5 NonAssociatedWithProgression
ENSG00000121058 COIL +-o
ENSG00000115520 COQ10B o+o
ENSG00000006695 COX10 ---
ENSG00000128510 CPA4 +o+
ENSG00000080819 CPOX NonAssociatedWithProgression
ENSG00000099942 CRKL o--b
ENSG00000170275 CRTAP NonAssociatedWithProgression
ENSG00000109861 CTSC o++a
ENSG00000100243 CYB5R3 o-o
ENSG00000006634 DBF4 ---
ENSG00000178105 DDX10 +o+
ENSG00000119522 DENND1A NonAssociatedWithProgression
ENSG00000100697 DICER1 NonAssociatedWithProgression
ENSG00000101191 DIDO1 o-o
ENSG00000147459 DOCK5 o++b
ENSG00000175283 DOLK NonAssociatedWithProgression
ENSG00000172269 DPAGT1 -+o
ENSG00000143507 DUSP10 NonAssociatedWithProgression
ENSG00000130829 DUSP9 NonAssociatedWithProgression
ENSG00000127334 DYRK2 o--b
ENSG00000169016 E2F6 oo-
ENSG00000129521 EGLN3 NonAssociatedWithProgression
ENSG00000130741 EIF2S3 o--a
ENSG00000135930 EIF4E2 o--a
ENSG00000087502 ERGIC2 NonAssociatedWithProgression
ENSG00000197930 ERO1L ---
ENSG00000221968 FADS3 o-+
ENSG00000141699 FAM134C +-o
ENSG00000183508 FAM46C ---
ENSG00000167695 FAM57A oo+
ENSG00000139146 FAM60A oo-
ENSG00000154511 FAM69A +o+
ENSG00000026103 FAS NonAssociatedWithProgression
ENSG00000180263 FGD6 o++b
ENSG00000100442 FKBP3 -+o
ENSG00000160688 FLAD1 o--b
ENSG00000102531 FNDC3A o+o
ENSG00000075420 FNDC3B +-o
ENSG00000104290 FZD3 o++a
ENSG00000143641 GALNT2 o--a
ENSG00000165219 GAPVD1 NonAssociatedWithProgression
ENSG00000167491 GATAD2A o--a
ENSG00000196505 GDAP2 NonAssociatedWithProgression
ENSG00000130309 GLT25D1 o--a
ENSG00000100938 GMPR2 -+o
ENSG00000146535 GNA12 NonAssociatedWithProgression
ENSG00000174021 GNG5 o+o
ENSG00000111670 GNPTAB o+o
ENSG00000198522 GPN1 o+o
ENSG00000109519 GRPEL1 o--b
ENSG00000113070 HBEGF o++a
ENSG00000173706 HEG1 NonAssociatedWithProgression
ENSG00000187837 HIST1H1C o--b
ENSG00000180573 HIST1H2AC NonAssociatedWithProgression
ENSG00000196787 HIST1H2AG NonAssociatedWithProgression
ENSG00000158373 HIST1H2BD NonAssociatedWithProgression
ENSG00000197459 HIST1H2BH oo-
ENSG00000197409 HIST1H3D +-o
ENSG00000183941 HIST2H4A ---
ENSG00000182217 HIST2H4B o--b
ENSG00000159399 HK2 o--b
ENSG00000137309 HMGA1 o--b
ENSG00000149948 HMGA2 oo-
ENSG00000072571 HMMR o+-
ENSG00000163565 IFI16 o--a
ENSG00000142166 IFNAR1 NonAssociatedWithProgression
ENSG00000027697 IFNGR1 NonAssociatedWithProgression
ENSG00000073792 IGF2BP2 -oo
ENSG00000008517 IL32 ---
ENSG00000136718 IMP4 o--b
ENSG00000106348 IMPDH1 o--a
ENSG00000068745 IP6K2 o--a
ENSG00000173226 IQCB1 +o+
ENSG00000185950 IRS2 NonAssociatedWithProgression
ENSG00000081692 JMJD4 NonAssociatedWithProgression
ENSG00000132361 KIAA0664 ---
ENSG00000121210 KIAA0922 o-o
ENSG00000155090 KLF10 o--b
ENSG00000109787 KLF3 +o+
ENSG00000025800 KPNA6 o--b
ENSG00000104660 LEPROTL1 o-o
ENSG00000136153 LMO7 o++a
ENSG00000111684 LPCAT3 o--a
ENSG00000173621 LRFN4 ---
ENSG00000144749 LRIG1 -+o
ENSG00000101367 MAPRE1 o--b
ENSG00000139793 MBNL2 NonAssociatedWithProgression
ENSG00000100294 MCAT o--b
ENSG00000123066 MED13L o-+
ENSG00000133997 MED6 NonAssociatedWithProgression
ENSG00000159479 MED8 o--b
ENSG00000182544 MFSD5 o--a
ENSG00000198408 MGEA5 o++b
ENSG00000164654 MIOS o++b
ENSG00000187098 MITF o--b
ENSG00000099875 MKNK2 o--b
ENSG00000175727 MLXIP o--b
ENSG00000132763 MMACHC o--a
ENSG00000183093 MRPL12 ---
ENSG00000122140 MRPS2 o--b
ENSG00000053372 MRTO4 o--a
ENSG00000143033 MTF2 +-o
ENSG00000107951 MTPAP o--a
ENSG00000132382 MYBBP1A o--b
ENSG00000136997 MYC o--b
ENSG00000141562 NARF NonAssociatedWithProgression
ENSG00000124151 NCOA3 o+o
ENSG00000165030 NFIL3 -+o
ENSG00000077150 NFKB2 NonAssociatedWithProgression
ENSG00000184117 NIPSNAP1 o--a
ENSG00000073536 NLE1 o--b
ENSG00000103202 NME4 --o
ENSG00000166197 NOLC1 o--b
ENSG00000160113 NR2F6 NonAssociatedWithProgression
ENSG00000213281 NRAS o--b
ENSG00000110713 NUP98 o--a
ENSG00000155463 OXA1L +o+
ENSG00000083454 P2RX5 o--b
ENSG00000090621 PABPC4 o--a
ENSG00000059378 PARP12 o++a
ENSG00000141179 PCTP ---
ENSG00000148843 PDCD11 NonAssociatedWithProgression
ENSG00000168291 PDHB o+o
ENSG00000148459 PDSS1 o+-
ENSG00000101856 PGRMC1 o-o
ENSG00000204138 PHACTR4 NonAssociatedWithProgression
ENSG00000067177 PHKA1 o++a
ENSG00000073921 PICALM +o+
ENSG00000135845 PIGC oo+
ENSG00000078142 PIK3C3 o+o
ENSG00000181690 PLAG1 oo-
ENSG00000118495 PLAGL1 NonAssociatedWithProgression
ENSG00000126003 PLAGL2 +-o
ENSG00000182378 PLCXD1 o--a
ENSG00000141682 PMAIP1 oo-
ENSG00000136480 POLG2 NonAssociatedWithProgression
ENSG00000186184 POLR1D o--a
ENSG00000058600 POLR3E NonAssociatedWithProgression
ENSG00000196313 POM121 o--b
ENSG00000143190 POU2F1 NonAssociatedWithProgression
ENSG00000130810 PPAN ---
ENSG00000162407 PPAP2B NonAssociatedWithProgression
ENSG00000128059 PPAT NonAssociatedWithProgression
ENSG00000149923 PPP4C --o
ENSG00000148840 PPRC1 o--b
ENSG00000221988 PPT2 o--a
ENSG00000110851 PRDM4 o--a
ENSG00000162409 PRKAA2 o++a
ENSG00000137492 PRKRIR NonAssociatedWithProgression
ENSG00000108671 PSMD11 NonAssociatedWithProgression
ENSG00000068878 PSME4 o--b
ENSG00000183255 PTTG1IP o--a
ENSG00000177192 PUS1 NonAssociatedWithProgression
ENSG00000137955 RABGGTB NonAssociatedWithProgression
ENSG00000023287 RB1CC1 o+o
ENSG00000162924 REL o-o
ENSG00000143333 RGS16 +oo
ENSG00000171700 RGS19 -+o
ENSG00000129667 RHBDF2 -+o
ENSG00000164292 RHOBTB3 NonAssociatedWithProgression
ENSG00000104312 RIPK2 o++b
ENSG00000157450 RNF111 o++b
ENSG00000082996 RNF13 o++b
ENSG00000146083 RNF44 NonAssociatedWithProgression
ENSG00000235489 RP11-386C23.1 o--b
ENSG00000108443 RPS6KB1 NonAssociatedWithProgression
ENSG00000175634 RPS6KB2 -o-
ENSG00000137996 RTCD1 NonAssociatedWithProgression
ENSG00000151835 SACS o+-
ENSG00000151967 SCHIP1 o++b
ENSG00000138802 SEC24B NonAssociatedWithProgression
ENSG00000138674 SEC31A o+o
ENSG00000163904 SENP2 o--a
ENSG00000179833 SERTAD2 NonAssociatedWithProgression
ENSG00000147955 SIGMAR1 ---
ENSG00000141526 SLC16A3 o-o
ENSG00000119899 SLC17A5 +o+
ENSG00000117479 SLC19A2 +o+
ENSG00000144136 SLC20A1 o-o
ENSG00000004864 SLC25A13 NonAssociatedWithProgression
ENSG00000164933 SLC25A32 +-o
ENSG00000059804 SLC2A3 NonAssociatedWithProgression
ENSG00000110660 SLC35F2 o--b
ENSG00000138074 SLC5A6 ---
ENSG00000103064 SLC7A6 o--b
ENSG00000127616 SMARCA4 o--b
ENSG00000173473 SMARCC1 o--a
ENSG00000100335 SMCR7L NonAssociatedWithProgression
ENSG00000123415 SMUG1 NonAssociatedWithProgression
ENSG00000092531 SNAP23 o+o
ENSG00000131876 SNRPA1 o--b
ENSG00000124562 SNRPC o--a
ENSG00000064652 SNX24 -+o
ENSG00000089006 SNX5 oo-
ENSG00000057252 SOAT1 NonAssociatedWithProgression
ENSG00000180008 SOCS4 +o+
ENSG00000103326 SOLH ---
ENSG00000140263 SORD o--a
ENSG00000124766 SOX4 +oo
ENSG00000164056 SPRY1 +o+
ENSG00000163486 SRGAP2 NonAssociatedWithProgression
ENSG00000081320 STK17B NonAssociatedWithProgression
ENSG00000156502 SUPV3L1 o--a
ENSG00000101945 SUV39H1 o--a
ENSG00000108639 SYNGR2 o--a
ENSG00000148835 TAF5 o--a
ENSG00000135801 TAF5L +-o
ENSG00000139546 TARBP2 o-o
ENSG00000136111 TBC1D4 o++a
ENSG00000113649 TCERG1 o--a
ENSG00000187079 TEAD1 NonAssociatedWithProgression
ENSG00000136891 TEX10 ---
ENSG00000003436 TFPI o++b
ENSG00000101158 TH1L o--b
ENSG00000100296 THOC5 NonAssociatedWithProgression
ENSG00000099800 TIMM13 o--a
ENSG00000126768 TIMM17B --o
ENSG00000105677 TMEM147 ---
ENSG00000157600 TMEM164 NonAssociatedWithProgression
ENSG00000135048 TMEM2 NonAssociatedWithProgression
ENSG00000095209 TMEM38B NonAssociatedWithProgression
ENSG00000166471 TMEM41B o-+
ENSG00000146072 TNFRSF21 o--a
ENSG00000125657 TNFSF9 -+o
ENSG00000186815 TPCN1 --o
ENSG00000128294 TPST2 o--b
ENSG00000056972 TRAF3IP2 o+o
ENSG00000065308 TRAM2 o-o
ENSG00000173334 TRIB1 o--b
ENSG00000196428 TSC22D2 o+-
ENSG00000135912 TTLL4 o--b
ENSG00000109332 UBE2D3 NonAssociatedWithProgression
ENSG00000135763 URB2 ---
ENSG00000103194 USP10 NonAssociatedWithProgression
ENSG00000140455 USP3 oo-
ENSG00000055483 USP36 ---
ENSG00000111962 UST NonAssociatedWithProgression
ENSG00000120800 UTP20 NonAssociatedWithProgression
ENSG00000049245 VAMP3 NonAssociatedWithProgression
ENSG00000173218 VANGL1 o--a
ENSG00000143952 VPS54 o--a
ENSG00000116874 WARS2 o-o
ENSG00000084463 WBP11 o--b
ENSG00000136709 WDR33 +o+
ENSG00000133316 WDR74 o--b
ENSG00000132953 XPO4 o--b
ENSG00000180667 YOD1 o--b
ENSG00000100426 ZBED4 o--b
ENSG00000236287 ZBED5 o+o
ENSG00000205189 ZBTB10 NonAssociatedWithProgression
ENSG00000112365 ZBTB24 ---
ENSG00000166860 ZBTB39 ---
ENSG00000163812 ZDHHC3 NonAssociatedWithProgression
ENSG00000156639 ZFAND3 o--b
ENSG00000107372 ZFAND5 o+-
ENSG00000005889 ZFX o--b
ENSG00000010539 ZNF200 NonAssociatedWithProgression
ENSG00000166261 ZNF202 ---
ENSG00000162702 ZNF281 o+o
ENSG00000142528 ZNF473 o--b