PEACHi
GeneSet hsa-miR-7-5p_targets (TarBase_6beta.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--a -3.1 0.03285 177.0 40.0 25.14
DownRegulated -4.7 2.9E-4 177.0 130.0 104.53
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000140470 ADAMTS17 -o-
ENSG00000204310 AGPAT1 o--b
ENSG00000053371 AKR7A2 o-o
ENSG00000072210 ALDH3A2 o--b
ENSG00000132746 ALDH3B2 NonAssociatedWithProgression
ENSG00000214160 ALG3 o--a
ENSG00000122359 ANXA11 NonAssociatedWithProgression
ENSG00000072958 AP1M1 o--b
ENSG00000185009 AP3M1 o--a
ENSG00000084234 APLP2 o+o
ENSG00000168374 ARF4 o+o
ENSG00000185305 ARL15 o++b
ENSG00000169136 ATF5 ---
ENSG00000069849 ATP1B3 o--b
ENSG00000107949 BCCIP -+o
ENSG00000103507 BCKDK o--a
ENSG00000186174 BCL9L o--b
ENSG00000204217 BMPR2 NonAssociatedWithProgression
ENSG00000159388 BTG2 o-o
ENSG00000171067 C11orf24 +oo
ENSG00000134779 C18orf10 NonAssociatedWithProgression
ENSG00000131943 C19orf12 NonAssociatedWithProgression
ENSG00000116667 C1orf21 o++a
ENSG00000082213 C5orf22 o++a
ENSG00000235173 C8orf30A ---
ENSG00000160014 CALM3 o--a
ENSG00000128595 CALU o--b
ENSG00000145349 CAMK2D NonAssociatedWithProgression
ENSG00000171302 CANT1 o--b
ENSG00000116489 CAPZA1 NonAssociatedWithProgression
ENSG00000122435 CCDC76 NonAssociatedWithProgression
ENSG00000101224 CDC25B o--a
ENSG00000105401 CDC37 ---
ENSG00000003402 CFLAR +-o
ENSG00000177200 CHD9 o--a
ENSG00000120903 CHRNA2 o--b
ENSG00000136026 CKAP4 NonAssociatedWithProgression
ENSG00000179335 CLK3 o--a
ENSG00000188603 CLN3 o++b
ENSG00000117519 CNN3 NonAssociatedWithProgression
ENSG00000155508 CNOT8 oo-
ENSG00000149600 COMMD7 oo+
ENSG00000088766 CRLS1 o+-
ENSG00000170275 CRTAP NonAssociatedWithProgression
ENSG00000140577 CRTC3 o-+
ENSG00000144579 CTDSP1 o--a
ENSG00000162144 CYBASC3 o--b
ENSG00000183283 DAZAP2 o-o
ENSG00000136279 DBNL o--a
ENSG00000129187 DCTD -oo
ENSG00000007923 DNAJC11 o--a
ENSG00000115137 DNAJC27 ---
ENSG00000101152 DNAJC5 o--a
ENSG00000147459 DOCK5 o++b
ENSG00000168393 DTYMK o-o
ENSG00000169718 DUS1L o--a
ENSG00000142634 EFHD2 o-o
ENSG00000110047 EHD1 ---
ENSG00000086232 EIF2AK1 NonAssociatedWithProgression
ENSG00000130741 EIF2S3 o--a
ENSG00000148730 EIF4EBP2 NonAssociatedWithProgression
ENSG00000163577 EIF5A2 o+-
ENSG00000197586 ENTPD6 o-o
ENSG00000196678 ERI2 +o+
ENSG00000180104 EXOC3 o--b
ENSG00000130713 EXOSC2 o--b
ENSG00000168040 FADD o--b
ENSG00000155744 FAM126B o--a
ENSG00000176973 FAM89B o--b
ENSG00000196924 FLNA ---
ENSG00000166225 FRS2 NonAssociatedWithProgression
ENSG00000143641 GALNT2 o--a
ENSG00000107862 GBF1 o-o
ENSG00000151892 GFRA1 NonAssociatedWithProgression
ENSG00000101003 GINS1 o+o
ENSG00000108262 GIT1 -o-
ENSG00000124767 GLO1 o-o
ENSG00000115419 GLS o--b
ENSG00000185803 GPR172A o--b
ENSG00000183150 GPR19 oo+
ENSG00000177885 GRB2 NonAssociatedWithProgression
ENSG00000178719 GRINA --o
ENSG00000148308 GTF3C5 o--a
ENSG00000115677 HDLBP o--a
ENSG00000126107 HECTD3 NonAssociatedWithProgression
ENSG00000148110 HIATL1 o-o
ENSG00000182952 HMGN4 o+o
ENSG00000153187 HNRNPU o--b
ENSG00000115756 HPCAL1 --o
ENSG00000166189 HPS6 o--a
ENSG00000133265 HSPBP1 o--a
ENSG00000119912 IDE -+o
ENSG00000140443 IGF1R o++b
ENSG00000143061 IGSF3 o++a
ENSG00000162729 IGSF8 ---
ENSG00000129351 ILF3 -o-
ENSG00000104369 JPH1 NonAssociatedWithProgression
ENSG00000055118 KCNH2 -oo
ENSG00000079999 KEAP1 o-o
ENSG00000115365 LANCL1 NonAssociatedWithProgression
ENSG00000189067 LITAF o++a
ENSG00000070018 LRP6 NonAssociatedWithProgression
ENSG00000108829 LRRC59 o--a
ENSG00000146963 LUC7L2 o--a
ENSG00000011009 LYPLA2 o--a
ENSG00000126934 MAP2K2 o--a
ENSG00000050748 MAPK9 -o-
ENSG00000175130 MARCKSL1 ---
ENSG00000015479 MATR3 -o-
ENSG00000182544 MFSD5 o--a
ENSG00000125457 MIF4GD NonAssociatedWithProgression
ENSG00000170854 MINA -+o
ENSG00000129255 MPDU1 o--b
ENSG00000072415 MPP5 NonAssociatedWithProgression
ENSG00000159111 MRPL10 o--a
ENSG00000102471 NDFIP2 NonAssociatedWithProgression
ENSG00000189043 NDUFA4 -+o
ENSG00000001167 NFYA NonAssociatedWithProgression
ENSG00000131408 NR1H2 o--a
ENSG00000015676 NUDCD3 o--b
ENSG00000101888 NXT2 NonAssociatedWithProgression
ENSG00000144909 OSBPL11 o--b
ENSG00000091039 OSBPL8 o-o
ENSG00000149269 PAK1 oo+
ENSG00000111224 PARP11 o++b
ENSG00000167004 PDIA3 o--a
ENSG00000070087 PFN2 NonAssociatedWithProgression
ENSG00000134686 PHC2 ---
ENSG00000102221 PHF16 NonAssociatedWithProgression
ENSG00000100564 PIGH NonAssociatedWithProgression
ENSG00000051382 PIK3CB -o-
ENSG00000021300 PLEKHB1 ---
ENSG00000054690 PLEKHH1 o++b
ENSG00000148229 POLE3 o--a
ENSG00000162407 PPAP2B NonAssociatedWithProgression
ENSG00000108179 PPIF o+-
ENSG00000204619 PPP1R11 o--b
ENSG00000137713 PPP2R1B o-+
ENSG00000148840 PPRC1 o--b
ENSG00000117450 PRDX1 --o
ENSG00000137492 PRKRIR NonAssociatedWithProgression
ENSG00000131467 PSME3 o-o
ENSG00000188647 PTAR1 o+o
ENSG00000112655 PTK7 o--a
ENSG00000184007 PTP4A2 o--a
ENSG00000132155 RAF1 NonAssociatedWithProgression
ENSG00000179051 RCC2 o--b
ENSG00000173039 RELA o--a
ENSG00000092871 RFFL o-o
ENSG00000129667 RHBDF2 -+o
ENSG00000137075 RNF38 o--b
ENSG00000181852 RNF41 o-o
ENSG00000204308 RNF5 o--b
ENSG00000174748 RPL15 o--a
ENSG00000133818 RRAS2 o++b
ENSG00000159579 RSPRY1 o+o
ENSG00000148484 RSU1 -oo
ENSG00000160753 RUSC1 o-o
ENSG00000163785 RYK --o
ENSG00000140497 SCAMP2 ---
ENSG00000138760 SCARB2 o++b
ENSG00000143252 SDHC o--b
ENSG00000120742 SERP1 --o
ENSG00000179833 SERTAD2 NonAssociatedWithProgression
ENSG00000167565 SERTAD3 NonAssociatedWithProgression
ENSG00000139718 SETD1B o--b
ENSG00000183955 SETD8 o--b
ENSG00000068903 SIRT2 --o
ENSG00000102743 SLC25A15 NonAssociatedWithProgression
ENSG00000147454 SLC25A37 ---
ENSG00000013306 SLC25A39 o-o
ENSG00000160785 SLC25A44 o--b
ENSG00000138459 SLC35A5 o++a
ENSG00000066117 SMARCD1 NonAssociatedWithProgression
ENSG00000099940 SNAP29 o-+
ENSG00000103326 SOLH ---
ENSG00000158480 SPATA2 NonAssociatedWithProgression
ENSG00000161011 SQSTM1 ---
ENSG00000163486 SRGAP2 NonAssociatedWithProgression
ENSG00000116649 SRM o--b
ENSG00000160075 SSU72 o--a
ENSG00000196182 STK40 o+o
ENSG00000213246 SUPT4H1 o--a
ENSG00000147133 TAF1 NonAssociatedWithProgression
ENSG00000231925 TAPBP ---
ENSG00000167202 TBC1D2B o--b
ENSG00000070814 TCOF1 o--b
ENSG00000003436 TFPI o++b
ENSG00000152291 TGOLN2 o-o
ENSG00000105197 TIMM50 ---
ENSG00000170348 TMED10 --o
ENSG00000172663 TMEM134 o--a
ENSG00000095209 TMEM38B NonAssociatedWithProgression
ENSG00000170876 TMEM43 NonAssociatedWithProgression
ENSG00000058804 TMEM48 NonAssociatedWithProgression
ENSG00000159596 TMEM69 +o+
ENSG00000174529 TMEM81 o--b
ENSG00000109084 TMEM97 o--b
ENSG00000168591 TMUB2 o--a
ENSG00000100354 TNRC6B o+o
ENSG00000065308 TRAM2 o-o
ENSG00000106785 TRIM14 NonAssociatedWithProgression
ENSG00000132481 TRIM47 NonAssociatedWithProgression
ENSG00000166925 TSC22D4 ---
ENSG00000211460 TSN NonAssociatedWithProgression
ENSG00000100304 TTLL12 o--a
ENSG00000114383 TUSC2 +-o
ENSG00000107341 UBE2R2 -o-
ENSG00000009335 UBE3C o--a
ENSG00000160803 UBQLN4 o--a
ENSG00000034063 UHRF1 o--b
ENSG00000103404 USP31 NonAssociatedWithProgression
ENSG00000118640 VAMP8 NonAssociatedWithProgression
ENSG00000048707 VPS13D ---
ENSG00000122958 VPS26A o+o
ENSG00000132612 VPS4A ---
ENSG00000158195 WASF2 NonAssociatedWithProgression
ENSG00000143324 XPR1 -+o
ENSG00000163812 ZDHHC3 NonAssociatedWithProgression
ENSG00000131381 ZFYVE20 NonAssociatedWithProgression
ENSG00000083844 ZNF264 o--a
ENSG00000125945 ZNF436 +o+
ENSG00000213297 ZNF625 +o+
ENSG00000197343 ZNF655 o++b
ENSG00000188372 ZP3 o--b
ENSG00000159840 ZYX oo+