PEACHi
GeneSet hsa-miR-24-3p_targets (TarBase_6beta.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
DownRegulated -2.5 0.03158 159.0 110.0 93.9
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000127837 AAMP o--a
ENSG00000135776 ABCB10 o++b
ENSG00000164163 ABCE1 NonAssociatedWithProgression
ENSG00000132142 ACACA o--b
ENSG00000102977 ACD o+-
ENSG00000136518 ACTL6A o--a
ENSG00000087274 ADD1 +o+
ENSG00000148700 ADD3 o--b
ENSG00000159322 ADPGK NonAssociatedWithProgression
ENSG00000130706 ADRM1 oo-
ENSG00000160216 AGPAT3 -o-
ENSG00000147853 AK3 o--b
ENSG00000118507 AKAP7 o++a
ENSG00000112294 ALDH5A1 o++b
ENSG00000120697 ALG5 o-o
ENSG00000104880 ARHGEF18 o-o
ENSG00000102606 ARHGEF7 NonAssociatedWithProgression
ENSG00000120805 ARL1 o--a
ENSG00000197785 ATAD3A o--a
ENSG00000178999 AURKB o--b
ENSG00000126453 BCL2L12 o-o
ENSG00000133169 BEX1 NonAssociatedWithProgression
ENSG00000012048 BRCA1 NonAssociatedWithProgression
ENSG00000112983 BRD8 o-+
ENSG00000132640 BTBD3 o+o
ENSG00000120685 C13orf23 o--a
ENSG00000167173 C15orf39 ---
ENSG00000176912 C18orf56 +o+
ENSG00000198858 C19orf22 ---
ENSG00000159055 C21orf45 NonAssociatedWithProgression
ENSG00000138867 C22orf13 o--a
ENSG00000124596 C6orf130 o-o
ENSG00000156928 C7orf30 NonAssociatedWithProgression
ENSG00000182307 C8orf33 NonAssociatedWithProgression
ENSG00000060339 CCAR1 o--b
ENSG00000160124 CCDC58 NonAssociatedWithProgression
ENSG00000145386 CCNA2 o--b
ENSG00000134057 CCNB1 oo-
ENSG00000144354 CDCA7 NonAssociatedWithProgression
ENSG00000135446 CDK4 o--a
ENSG00000111276 CDKN1B +o+
ENSG00000100888 CHD8 +-o
ENSG00000149554 CHEK1 o+o
ENSG00000072609 CHFR o-o
ENSG00000099622 CIRBP o--b
ENSG00000140931 CMTM3 NonAssociatedWithProgression
ENSG00000183723 CMTM4 NonAssociatedWithProgression
ENSG00000110442 COMMD9 +-o
ENSG00000111652 COPS7A o-o
ENSG00000103653 CSK o--b
ENSG00000176102 CSTF3 NonAssociatedWithProgression
ENSG00000102974 CTCF o--b
ENSG00000144579 CTDSP1 o--a
ENSG00000175215 CTDSP2 o-+
ENSG00000119004 CYP20A1 oo-
ENSG00000172795 DCP2 o-o
ENSG00000085788 DDHD2 NonAssociatedWithProgression
ENSG00000158796 DEDD -o-
ENSG00000116133 DHCR24 NonAssociatedWithProgression
ENSG00000228716 DHFR o++a
ENSG00000148719 DNAJB12 o--a
ENSG00000157538 DSCR3 NonAssociatedWithProgression
ENSG00000143476 DTL NonAssociatedWithProgression
ENSG00000169718 DUS1L o--a
ENSG00000101412 E2F1 o--b
ENSG00000007968 E2F2 o--a
ENSG00000112242 E2F3 NonAssociatedWithProgression
ENSG00000130741 EIF2S3 o--a
ENSG00000075151 EIF4G3 NonAssociatedWithProgression
ENSG00000107371 EXOSC3 NonAssociatedWithProgression
ENSG00000103876 FAH o-o
ENSG00000178974 FBXO34 oo-
ENSG00000168496 FEN1 NonAssociatedWithProgression
ENSG00000125954 FNTB oo+
ENSG00000146729 GBAS o+o
ENSG00000145990 GFOD1 oo-
ENSG00000135821 GLUL NonAssociatedWithProgression
ENSG00000197045 GMFB +-o
ENSG00000116906 GNPAT NonAssociatedWithProgression
ENSG00000185803 GPR172A o--b
ENSG00000153767 GTF2E1 o++b
ENSG00000115207 GTF3C2 NonAssociatedWithProgression
ENSG00000188486 H2AFX ---
ENSG00000116478 HDAC1 ---
ENSG00000169635 HIC2 o--a
ENSG00000164104 HMGB2 o--b
ENSG00000025156 HSF2 o-o
ENSG00000173226 IQCB1 +o+
ENSG00000008083 JARID2 o-o
ENSG00000080608 KIAA0020 o-o
ENSG00000007202 KIAA0100 o--a
ENSG00000177728 KIAA0195 o--b
ENSG00000158941 KIAA1967 o--a
ENSG00000124702 KLHDC3 o--a
ENSG00000213160 KLHL23 o++b
ENSG00000025800 KPNA6 o--b
ENSG00000104341 LAPTM4B oo+
ENSG00000143815 LBR +oo
ENSG00000131899 LLGL1 o--a
ENSG00000161654 LSM12 o--b
ENSG00000105216 LSM14A +-o
ENSG00000112062 MAPK14 o++b
ENSG00000175130 MARCKSL1 ---
ENSG00000015479 MATR3 -o-
ENSG00000166987 MBD6 o--b
ENSG00000065328 MCM10 NonAssociatedWithProgression
ENSG00000104738 MCM4 o--a
ENSG00000137337 MDC1 o-o
ENSG00000175221 MED16 ---
ENSG00000148297 MED22 o-o
ENSG00000008838 MED24 NonAssociatedWithProgression
ENSG00000111142 METAP2 NonAssociatedWithProgression
ENSG00000167470 MIDN o--b
ENSG00000155229 MMS19 o--b
ENSG00000108826 MRPL27 -+o
ENSG00000185608 MRPL40 NonAssociatedWithProgression
ENSG00000175110 MRPS22 o--a
ENSG00000062582 MRPS24 o--a
ENSG00000143033 MTF2 +-o
ENSG00000136997 MYC o--b
ENSG00000141562 NARF NonAssociatedWithProgression
ENSG00000132780 NASP o--a
ENSG00000114503 NCBP2 o--b
ENSG00000198646 NCOA6 o--b
ENSG00000173848 NET1 oo-
ENSG00000100906 NFKBIA o-o
ENSG00000148400 NOTCH1 o+o
ENSG00000185269 NOTUM NonAssociatedWithProgression
ENSG00000180530 NRIP1 o++a
ENSG00000138750 NUP54 o-o
ENSG00000060491 OGFR o--b
ENSG00000172939 OXSR1 NonAssociatedWithProgression
ENSG00000170515 PA2G4 NonAssociatedWithProgression
ENSG00000130669 PAK4 o--b
ENSG00000156374 PCGF6 o+o
ENSG00000132646 PCNA -o-
ENSG00000196923 PDLIM7 -oo
ENSG00000140992 PDPK1 -o-
ENSG00000160209 PDXK -+o
ENSG00000132326 PER2 +-o
ENSG00000102221 PHF16 NonAssociatedWithProgression
ENSG00000144362 PHOSPHO2 o++b
ENSG00000102096 PIM2 NonAssociatedWithProgression
ENSG00000126003 PLAGL2 +-o
ENSG00000144231 POLR2D o--b
ENSG00000100034 PPM1F oo+
ENSG00000221823 PPP3R1 +oo
ENSG00000198056 PRIM1 ---
ENSG00000137492 PRKRIR NonAssociatedWithProgression
ENSG00000173692 PSMD1 NonAssociatedWithProgression
ENSG00000131467 PSME3 o-o
ENSG00000152229 PSTPIP2 o-+
ENSG00000074696 PTPLAD1 o-o
ENSG00000006451 RALA o-+
ENSG00000123728 RAP2C o++b
ENSG00000173653 RCE1 o--b
ENSG00000143207 RFWD2 o++a
ENSG00000140983 RHOT2 o--b
ENSG00000123091 RNF11 o++b
ENSG00000151692 RNF144A o++a
ENSG00000121481 RNF2 NonAssociatedWithProgression
ENSG00000146223 RPL7L1 ---
ENSG00000171848 RRM2 o--a
ENSG00000163993 S100P +-o
ENSG00000047634 SCML1 NonAssociatedWithProgression
ENSG00000102098 SCML2 NonAssociatedWithProgression
ENSG00000129158 SERGEF --o
ENSG00000110911 SLC11A2 NonAssociatedWithProgression
ENSG00000102743 SLC25A15 NonAssociatedWithProgression
ENSG00000059804 SLC2A3 NonAssociatedWithProgression
ENSG00000157593 SLC35B2 o-o
ENSG00000138074 SLC5A6 ---
ENSG00000139514 SLC7A1 +-o
ENSG00000125870 SNRPB2 NonAssociatedWithProgression
ENSG00000100028 SNRPD3 o-o
ENSG00000186767 SPIN4 NonAssociatedWithProgression
ENSG00000125834 STK35 ---
ENSG00000124222 STX16 o--a
ENSG00000184900 SUMO3 o--a
ENSG00000172660 TAF15 o--b
ENSG00000028839 TBPL1 NonAssociatedWithProgression
ENSG00000172009 THOP1 ---
ENSG00000166881 TMEM194A +-o
ENSG00000146842 TMEM209 o++b
ENSG00000125247 TMTC4 --o
ENSG00000118503 TNFAIP3 o--a
ENSG00000168884 TNIP2 o--b
ENSG00000064419 TNPO3 NonAssociatedWithProgression
ENSG00000100216 TOMM22 o--b
ENSG00000025772 TOMM34 o--a
ENSG00000198900 TOP1 o+o
ENSG00000101255 TRIB3 +-o
ENSG00000108219 TSPAN14 ---
ENSG00000175063 UBE2C o-o
ENSG00000114062 UBE3A NonAssociatedWithProgression
ENSG00000109814 UGDH NonAssociatedWithProgression
ENSG00000103194 USP10 NonAssociatedWithProgression
ENSG00000134086 VHL ---
ENSG00000131475 VPS25 ---
ENSG00000069329 VPS35 o-o
ENSG00000100749 VRK1 +oo
ENSG00000182093 WRB o++b
ENSG00000180667 YOD1 o--b
ENSG00000214717 ZBED1 ---
ENSG00000163812 ZDHHC3 NonAssociatedWithProgression
ENSG00000165724 ZMYND19 o--a
ENSG00000171940 ZNF217 o--b
ENSG00000083844 ZNF264 o--a
ENSG00000130803 ZNF317 o--a