PEACHi
GeneSet hsa-miR-19b-3p_targets (TarBase_6beta.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
oo- -2.9 0.04171 113.0 7.0 2.15
UpRegulated -2.4 0.03531 113.0 43.0 30.56
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000011198 ABHD5 NonAssociatedWithProgression
ENSG00000155893 ACPL2 o--b
ENSG00000130706 ADRM1 oo-
ENSG00000119523 ALG2 NonAssociatedWithProgression
ENSG00000088448 ANKRD10 NonAssociatedWithProgression
ENSG00000139645 ANKRD52 NonAssociatedWithProgression
ENSG00000157823 AP3S2 ---
ENSG00000175220 ARHGAP1 NonAssociatedWithProgression
ENSG00000198826 ARHGAP11A oo-
ENSG00000165322 ARHGAP12 o++b
ENSG00000054267 ARID4B o-o
ENSG00000170540 ARL6IP1 o--b
ENSG00000113369 ARRDC3 NonAssociatedWithProgression
ENSG00000115966 ATF2 NonAssociatedWithProgression
ENSG00000149311 ATM NonAssociatedWithProgression
ENSG00000166454 ATMIN o++b
ENSG00000155097 ATP6V1C1 o++b
ENSG00000124788 ATXN1 oo+
ENSG00000146776 ATXN7L1 -+o
ENSG00000166619 BLCAP NonAssociatedWithProgression
ENSG00000148925 BTBD10 oo+
ENSG00000132640 BTBD3 o+o
ENSG00000166272 C10orf26 ---
ENSG00000174206 C12orf66 o-o
ENSG00000125149 C16orf70 o-o
ENSG00000149639 C20orf117 NonAssociatedWithProgression
ENSG00000180611 C3orf59 NonAssociatedWithProgression
ENSG00000130559 CAMSAP1 +-o
ENSG00000163660 CCNL1 NonAssociatedWithProgression
ENSG00000198087 CD2AP NonAssociatedWithProgression
ENSG00000117335 CD46 NonAssociatedWithProgression
ENSG00000166451 CENPN o+-
ENSG00000135837 CEP350 o++b
ENSG00000143375 CGN ---
ENSG00000130779 CLIP1 o+o
ENSG00000080802 CNOT4 ---
ENSG00000113300 CNOT6 +-o
ENSG00000006695 COX10 ---
ENSG00000108582 CPD o++a
ENSG00000103381 CPPED1 NonAssociatedWithProgression
ENSG00000111269 CREBL2 o++b
ENSG00000169118 CSNK1G1 o--a
ENSG00000198730 CTR9 o-o
ENSG00000155016 CYP2U1 NonAssociatedWithProgression
ENSG00000110367 DDX6 o--b
ENSG00000136986 DERL1 NonAssociatedWithProgression
ENSG00000104093 DMXL2 o++a
ENSG00000069345 DNAJA2 o-o
ENSG00000121083 DYNLL2 NonAssociatedWithProgression
ENSG00000129173 E2F8 NonAssociatedWithProgression
ENSG00000129521 EGLN3 NonAssociatedWithProgression
ENSG00000092847 EIF2C1 -+o
ENSG00000118402 ELOVL4 +-o
ENSG00000120616 EPC1 o--b
ENSG00000143756 FBXO28 NonAssociatedWithProgression
ENSG00000164117 FBXO8 o++b
ENSG00000163820 FYCO1 NonAssociatedWithProgression
ENSG00000145990 GFOD1 oo-
ENSG00000101216 GMEB2 o--a
ENSG00000186566 GPATCH8 o-o
ENSG00000170445 HARS o--b
ENSG00000105856 HBP1 o+o
ENSG00000173706 HEG1 NonAssociatedWithProgression
ENSG00000166135 HIF1AN NonAssociatedWithProgression
ENSG00000163349 HIPK1 NonAssociatedWithProgression
ENSG00000112972 HMGCS1 oo-
ENSG00000134049 IER3IP1 o--a
ENSG00000106348 IMPDH1 o--a
ENSG00000008083 JARID2 o-o
ENSG00000102781 KATNAL1 NonAssociatedWithProgression
ENSG00000110906 KCTD10 NonAssociatedWithProgression
ENSG00000112078 KCTD20 o--a
ENSG00000158941 KIAA1967 o--a
ENSG00000155090 KLF10 o--b
ENSG00000162413 KLHL21 NonAssociatedWithProgression
ENSG00000143815 LBR +oo
ENSG00000154359 LONRF1 +oo
ENSG00000123684 LPGAT1 o++b
ENSG00000139263 LRIG3 -+o
ENSG00000157193 LRP8 o--a
ENSG00000152601 MBNL1 NonAssociatedWithProgression
ENSG00000116604 MEF2D o--b
ENSG00000130150 MOSPD2 o+o
ENSG00000051825 MPHOSPH9 o--b
ENSG00000118242 MREG o++b
ENSG00000115364 MRPL19 NonAssociatedWithProgression
ENSG00000124275 MTRR o+-
ENSG00000166579 NDEL1 o++b
ENSG00000090266 NDUFB2 -oo
ENSG00000147862 NFIB NonAssociatedWithProgression
ENSG00000113580 NR3C1 o--a
ENSG00000164164 OTUD4 o+-
ENSG00000129116 PALLD NonAssociatedWithProgression
ENSG00000164329 PAPD4 NonAssociatedWithProgression
ENSG00000166889 PATL1 NonAssociatedWithProgression
ENSG00000088356 PDRG1 o--b
ENSG00000120509 PDZD11 NonAssociatedWithProgression
ENSG00000143442 POGZ NonAssociatedWithProgression
ENSG00000158615 PPP1R15B +-o
ENSG00000132356 PRKAA1 -o-
ENSG00000142875 PRKACB o--b
ENSG00000106772 PRUNE2 o++a
ENSG00000197746 PSAP oo-
ENSG00000110801 PSMD9 o--b
ENSG00000112245 PTP4A1 o--a
ENSG00000088179 PTPN4 o++b
ENSG00000144724 PTPRG NonAssociatedWithProgression
ENSG00000138069 RAB1A o++b
ENSG00000111540 RAB5B o--b
ENSG00000123728 RAP2C o++b
ENSG00000068028 RASSF1 o--a
ENSG00000101265 RASSF2 o++a
ENSG00000072042 RDH11 o--a
ENSG00000167550 RHEBL1 o--a
ENSG00000123091 RNF11 o++b
ENSG00000157450 RNF111 o++b
ENSG00000145860 RNF145 o-o
ENSG00000181852 RNF41 o-o
ENSG00000117748 RPA2 oo-
ENSG00000133818 RRAS2 o++b
ENSG00000141858 SAMD1 o--b
ENSG00000156671 SAMD8 o+o
ENSG00000101310 SEC23B NonAssociatedWithProgression
ENSG00000138593 SECISBP2L +o+
ENSG00000132824 SERINC3 oo-
ENSG00000187231 SESTD1 o-+
ENSG00000197860 SGTB o--b
ENSG00000171241 SHCBP1 -o-
ENSG00000139737 SLAIN1 NonAssociatedWithProgression
ENSG00000116704 SLC35D1 o++b
ENSG00000070214 SLC44A1 o++a
ENSG00000033867 SLC4A7 oo+
ENSG00000163681 SLMAP o+o
ENSG00000141646 SMAD4 o--b
ENSG00000080503 SMARCA2 NonAssociatedWithProgression
ENSG00000143499 SMYD2 o+o
ENSG00000143553 SNAPIN NonAssociatedWithProgression
ENSG00000180008 SOCS4 +o+
ENSG00000159140 SON NonAssociatedWithProgression
ENSG00000158480 SPATA2 NonAssociatedWithProgression
ENSG00000179119 SPTY2D1 o+o
ENSG00000112079 STK38 o--b
ENSG00000110066 SUV420H1 o+o
ENSG00000130699 TAF4 o++b
ENSG00000136111 TBC1D4 o++a
ENSG00000163513 TGFBR2 +o+
ENSG00000172009 THOP1 ---
ENSG00000175348 TMEM9B NonAssociatedWithProgression
ENSG00000100354 TNRC6B o+o
ENSG00000109654 TRIM2 o+o
ENSG00000197323 TRIM33 NonAssociatedWithProgression
ENSG00000213186 TRIM59 NonAssociatedWithProgression
ENSG00000049245 VAMP3 NonAssociatedWithProgression
ENSG00000119541 VPS4B NonAssociatedWithProgression
ENSG00000132471 WBP2 NonAssociatedWithProgression
ENSG00000162923 WDR26 NonAssociatedWithProgression
ENSG00000136709 WDR33 +o+
ENSG00000166483 WEE1 NonAssociatedWithProgression
ENSG00000015532 XYLT2 --o
ENSG00000083896 YTHDC1 o-o
ENSG00000174282 ZBTB4 o-+
ENSG00000160445 ZER1 o--a
ENSG00000107372 ZFAND5 o+-
ENSG00000121741 ZMYM2 NonAssociatedWithProgression
ENSG00000171940 ZNF217 o--b
ENSG00000189042 ZNF567 NonAssociatedWithProgression
ENSG00000122482 ZNF644 NonAssociatedWithProgression
ENSG00000147180 ZNF711 NonAssociatedWithProgression
ENSG00000182903 ZNF721 NonAssociatedWithProgression