PEACHi
GeneSet hsa-miR-142-3p_targets (TarBase_6beta.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o++b -3.9 0.0095 44.0 11.0 3.52
UpRegulated -4.0 0.0014 44.0 23.0 11.9
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000165923 AGBL2 o++a
ENSG00000168374 ARF4 o+o
ENSG00000165322 ARHGAP12 o++b
ENSG00000185305 ARL15 o++b
ENSG00000177917 ARL6IP6 NonAssociatedWithProgression
ENSG00000133794 ARNTL NonAssociatedWithProgression
ENSG00000174437 ATP2A2 -o-
ENSG00000100916 BRMS1L o--b
ENSG00000152219 C11orf46 NonAssociatedWithProgression
ENSG00000184313 C1orf175 NonAssociatedWithProgression
ENSG00000166278 C2 NonAssociatedWithProgression
ENSG00000181904 C5orf24 o++b
ENSG00000147894 C9orf72 o++b
ENSG00000136436 CALCOCO2 NonAssociatedWithProgression
ENSG00000107443 CCNJ o--b
ENSG00000094804 CDC6 NonAssociatedWithProgression
ENSG00000170779 CDCA4 o--a
ENSG00000169504 CLIC4 +oo
ENSG00000103351 CLUAP1 oo+
ENSG00000143771 CNIH4 NonAssociatedWithProgression
ENSG00000132912 DCTN4 NonAssociatedWithProgression
ENSG00000162616 DNAJB4 o++b
ENSG00000116406 EDEM3 o--a
ENSG00000154380 ENAH o++b
ENSG00000143845 ETNK2 -+o
ENSG00000039523 FAM65A ---
ENSG00000119812 FAM98A o-+
ENSG00000110429 FBXO3 o+o
ENSG00000156052 GNAQ oo+
ENSG00000066455 GOLGA5 -+o
ENSG00000152642 GPD1L o++a
ENSG00000125629 INSIG2 o-+
ENSG00000170604 IRF2BP1 ---
ENSG00000138448 ITGAV o++b
ENSG00000178695 KCTD12 o++b
ENSG00000122203 KIAA1191 o--b
ENSG00000198162 MAN1A2 o+o
ENSG00000180398 MCFD2 NonAssociatedWithProgression
ENSG00000185787 MORF4L1 NonAssociatedWithProgression
ENSG00000123562 MORF4L2 NonAssociatedWithProgression
ENSG00000061676 NCKAP1 o+o
ENSG00000088833 NSFL1C ---
ENSG00000120327 PCDHB14 +o+
ENSG00000203880 PCMTD2 o++b
ENSG00000100804 PSMB5 o--b
ENSG00000197170 PSMD12 oo-
ENSG00000197713 RPE NonAssociatedWithProgression
ENSG00000048392 RRM2B -+o
ENSG00000187742 SECISBP2 o--b
ENSG00000183918 SH2D1A o--b
ENSG00000145604 SKP2 o++b
ENSG00000115084 SLC35F5 o++b
ENSG00000157800 SLC37A3 o++a
ENSG00000152503 TRIM36 o-o
ENSG00000104343 UBE2W +o+
ENSG00000176105 YES1 +-o
ENSG00000130856 ZNF236 +-o
ENSG00000167562 ZNF701 NonAssociatedWithProgression