PEACHi
GeneSet hsa-miR-130b-3p_targets (TarBase_6beta.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
oo- -3.6 0.01523 112.0 8.0 2.13
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000155893 ACPL2 o--b
ENSG00000105663 AD000671.3 o--a
ENSG00000160710 ADAR o--a
ENSG00000197381 ADARB1 o++b
ENSG00000023516 AKAP11 NonAssociatedWithProgression
ENSG00000139645 ANKRD52 NonAssociatedWithProgression
ENSG00000095139 ARCN1 o-o
ENSG00000175220 ARHGAP1 NonAssociatedWithProgression
ENSG00000165322 ARHGAP12 o++b
ENSG00000054267 ARID4B o-o
ENSG00000120805 ARL1 o--a
ENSG00000170540 ARL6IP1 o--b
ENSG00000113369 ARRDC3 NonAssociatedWithProgression
ENSG00000148331 ASB6 o--a
ENSG00000111875 ASF1A NonAssociatedWithProgression
ENSG00000107669 ATE1 -+o
ENSG00000166454 ATMIN o++b
ENSG00000155097 ATP6V1C1 o++b
ENSG00000166619 BLCAP NonAssociatedWithProgression
ENSG00000140299 BNIP2 NonAssociatedWithProgression
ENSG00000185658 BRWD1 NonAssociatedWithProgression
ENSG00000148925 BTBD10 oo+
ENSG00000132640 BTBD3 o+o
ENSG00000154640 BTG3 NonAssociatedWithProgression
ENSG00000100483 C14orf138 NonAssociatedWithProgression
ENSG00000125149 C16orf70 o-o
ENSG00000117616 C1orf63 NonAssociatedWithProgression
ENSG00000179021 C3orf38 oo-
ENSG00000180611 C3orf59 NonAssociatedWithProgression
ENSG00000164603 C7orf60 NonAssociatedWithProgression
ENSG00000077549 CAPZB o--b
ENSG00000067955 CBFB o--a
ENSG00000198087 CD2AP NonAssociatedWithProgression
ENSG00000175216 CKAP5 NonAssociatedWithProgression
ENSG00000130779 CLIP1 o+o
ENSG00000080802 CNOT4 ---
ENSG00000113300 CNOT6 +-o
ENSG00000006695 COX10 ---
ENSG00000103381 CPPED1 NonAssociatedWithProgression
ENSG00000121671 CRY2 o--a
ENSG00000169118 CSNK1G1 o--a
ENSG00000108654 DDX5 NonAssociatedWithProgression
ENSG00000110367 DDX6 o--b
ENSG00000184545 DUSP8 ---
ENSG00000121083 DYNLL2 NonAssociatedWithProgression
ENSG00000101412 E2F1 o--b
ENSG00000129521 EGLN3 NonAssociatedWithProgression
ENSG00000092847 EIF2C1 -+o
ENSG00000120616 EPC1 o--b
ENSG00000108799 EZH1 NonAssociatedWithProgression
ENSG00000118564 FBXL5 o-+
ENSG00000143756 FBXO28 NonAssociatedWithProgression
ENSG00000198815 FOXJ3 NonAssociatedWithProgression
ENSG00000163820 FYCO1 NonAssociatedWithProgression
ENSG00000180447 GAS1 o++b
ENSG00000145990 GFOD1 oo-
ENSG00000119392 GLE1 NonAssociatedWithProgression
ENSG00000069966 GNB5 -o-
ENSG00000047932 GOPC NonAssociatedWithProgression
ENSG00000092978 GPATCH2 NonAssociatedWithProgression
ENSG00000186566 GPATCH8 o-o
ENSG00000106070 GRB10 oo-
ENSG00000170445 HARS o--b
ENSG00000173706 HEG1 NonAssociatedWithProgression
ENSG00000166135 HIF1AN NonAssociatedWithProgression
ENSG00000010818 HIVEP2 NonAssociatedWithProgression
ENSG00000105323 HNRNPUL1 o--b
ENSG00000166598 HSP90B1 NonAssociatedWithProgression
ENSG00000116237 ICMT o--b
ENSG00000134049 IER3IP1 o--a
ENSG00000008083 JARID2 o-o
ENSG00000102781 KATNAL1 NonAssociatedWithProgression
ENSG00000170852 KBTBD2 oo-
ENSG00000110906 KCTD10 NonAssociatedWithProgression
ENSG00000112078 KCTD20 o--a
ENSG00000159658 KIAA0494 NonAssociatedWithProgression
ENSG00000120071 KIAA1267 oo-
ENSG00000122778 KIAA1549 o++b
ENSG00000170903 KIAA1826 NonAssociatedWithProgression
ENSG00000162413 KLHL21 NonAssociatedWithProgression
ENSG00000179454 KLHL28 NonAssociatedWithProgression
ENSG00000143815 LBR +oo
ENSG00000050405 LIMA1 -+o
ENSG00000123684 LPGAT1 o++b
ENSG00000157193 LRP8 o--a
ENSG00000152601 MBNL1 NonAssociatedWithProgression
ENSG00000167470 MIDN o--b
ENSG00000075975 MKRN2 NonAssociatedWithProgression
ENSG00000051825 MPHOSPH9 o--b
ENSG00000072415 MPP5 NonAssociatedWithProgression
ENSG00000118242 MREG o++b
ENSG00000108389 MTMR4 NonAssociatedWithProgression
ENSG00000104643 MTMR9 +oo
ENSG00000166579 NDEL1 o++b
ENSG00000147862 NFIB NonAssociatedWithProgression
ENSG00000100503 NIN oo+
ENSG00000113580 NR3C1 o--a
ENSG00000164164 OTUD4 o+-
ENSG00000164329 PAPD4 NonAssociatedWithProgression
ENSG00000090060 PAPOLA NonAssociatedWithProgression
ENSG00000163346 PBXIP1 o--b
ENSG00000088356 PDRG1 o--b
ENSG00000120509 PDZD11 NonAssociatedWithProgression
ENSG00000165650 PDZD8 NonAssociatedWithProgression
ENSG00000118482 PHF3 NonAssociatedWithProgression
ENSG00000143157 POGK o--a
ENSG00000143442 POGZ NonAssociatedWithProgression
ENSG00000158615 PPP1R15B +-o
ENSG00000132356 PRKAA1 -o-
ENSG00000171867 PRNP NonAssociatedWithProgression
ENSG00000106772 PRUNE2 o++a
ENSG00000197746 PSAP oo-
ENSG00000110801 PSMD9 o--b
ENSG00000165983 PTER o++a
ENSG00000112245 PTP4A1 o--a
ENSG00000088179 PTPN4 o++b
ENSG00000144724 PTPRG NonAssociatedWithProgression
ENSG00000206418 RAB12 o--a
ENSG00000174903 RAB1B o-o
ENSG00000144566 RAB5A NonAssociatedWithProgression
ENSG00000111540 RAB5B o--b
ENSG00000123728 RAP2C o++b
ENSG00000068028 RASSF1 o--a
ENSG00000123094 RASSF8 o+-
ENSG00000139687 RB1 NonAssociatedWithProgression
ENSG00000072042 RDH11 o--a
ENSG00000145860 RNF145 o-o
ENSG00000181852 RNF41 o-o
ENSG00000117748 RPA2 oo-
ENSG00000101413 RPRD1B o--b
ENSG00000020633 RUNX3 o--b
ENSG00000140497 SCAMP2 ---
ENSG00000101310 SEC23B NonAssociatedWithProgression
ENSG00000138593 SECISBP2L +o+
ENSG00000132824 SERINC3 oo-
ENSG00000187231 SESTD1 o-+
ENSG00000197860 SGTB o--b
ENSG00000131370 SH3BP5 o++b
ENSG00000139737 SLAIN1 NonAssociatedWithProgression
ENSG00000126903 SLC10A3 --o
ENSG00000116704 SLC35D1 o++b
ENSG00000070214 SLC44A1 o++a
ENSG00000198743 SLC5A3 NonAssociatedWithProgression
ENSG00000163681 SLMAP o+o
ENSG00000141646 SMAD4 o--b
ENSG00000143499 SMYD2 o+o
ENSG00000143553 SNAPIN NonAssociatedWithProgression
ENSG00000147164 SNX12 o--b
ENSG00000180008 SOCS4 +o+
ENSG00000159140 SON NonAssociatedWithProgression
ENSG00000158480 SPATA2 NonAssociatedWithProgression
ENSG00000118046 STK11 o--a
ENSG00000165209 STRBP --o
ENSG00000198252 STYX NonAssociatedWithProgression
ENSG00000110066 SUV420H1 o+o
ENSG00000106052 TAX1BP1 o+o
ENSG00000163513 TGFBR2 +o+
ENSG00000172009 THOP1 ---
ENSG00000110108 TMEM109 o-o
ENSG00000135956 TMEM127 o-o
ENSG00000175348 TMEM9B NonAssociatedWithProgression
ENSG00000146072 TNFRSF21 o--a
ENSG00000078902 TOLLIP o-o
ENSG00000109654 TRIM2 o+o
ENSG00000213186 TRIM59 NonAssociatedWithProgression
ENSG00000125733 TRIP10 NonAssociatedWithProgression
ENSG00000074319 TSG101 NonAssociatedWithProgression
ENSG00000173960 UBXN2A o++a
ENSG00000164405 UQCRQ o-o
ENSG00000136709 WDR33 +o+
ENSG00000166483 WEE1 NonAssociatedWithProgression
ENSG00000174282 ZBTB4 o-+
ENSG00000166261 ZNF202 ---
ENSG00000171940 ZNF217 o--b
ENSG00000083844 ZNF264 o--a
ENSG00000189042 ZNF567 NonAssociatedWithProgression