PEACHi
GeneSet hsa-miR-101-3p_targets (TarBase_6beta.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o+- -4.8 0.004 85.0 11.0 2.75
o++b -3.0 0.03443 85.0 15.0 6.8
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000114739 ACVR2B +-o
ENSG00000139154 AEBP2 NonAssociatedWithProgression
ENSG00000072364 AFF4 NonAssociatedWithProgression
ENSG00000023516 AKAP11 NonAssociatedWithProgression
ENSG00000144233 AMMECR1L NonAssociatedWithProgression
ENSG00000166747 AP1G1 o+-
ENSG00000185009 AP3M1 o--a
ENSG00000047365 ARAP2 o++b
ENSG00000117713 ARID1A o--b
ENSG00000110955 ATP5B o--b
ENSG00000124788 ATXN1 oo+
ENSG00000116128 BCL9 NonAssociatedWithProgression
ENSG00000089685 BIRC5 ---
ENSG00000159388 BTG2 o-o
ENSG00000119965 C10orf88 NonAssociatedWithProgression
ENSG00000162642 C1orf52 o+-
ENSG00000196227 C20orf177 o++b
ENSG00000101189 C20orf20 ---
ENSG00000164603 C7orf60 NonAssociatedWithProgression
ENSG00000078699 CBFA2T2 o--a
ENSG00000141582 CBX4 o+-
ENSG00000117335 CD46 NonAssociatedWithProgression
ENSG00000151465 CDC123 NonAssociatedWithProgression
ENSG00000097046 CDC7 NonAssociatedWithProgression
ENSG00000100422 CERK o--b
ENSG00000198730 CTR9 o-o
ENSG00000129187 DCTD -oo
ENSG00000168209 DDIT4 o+-
ENSG00000086189 DIMT1L ---
ENSG00000112242 E2F3 NonAssociatedWithProgression
ENSG00000106462 EZH2 NonAssociatedWithProgression
ENSG00000197601 FAR1 o--a
ENSG00000138081 FBXO11 +o+
ENSG00000109670 FBXW7 o+-
ENSG00000137166 FOXP4 +-o
ENSG00000139926 FRMD6 o++b
ENSG00000166225 FRS2 NonAssociatedWithProgression
ENSG00000101216 GMEB2 o--a
ENSG00000078369 GNB1 o--a
ENSG00000119927 GPAM o-o
ENSG00000112144 ICK o+o
ENSG00000114933 INO80D o--b
ENSG00000177606 JUN NonAssociatedWithProgression
ENSG00000171126 KCNG3 o--a
ENSG00000142945 KIF2C o--b
ENSG00000118922 KLF12 o+o
ENSG00000213160 KLHL23 o++b
ENSG00000143815 LBR +oo
ENSG00000196233 LCOR NonAssociatedWithProgression
ENSG00000148943 LIN7C NonAssociatedWithProgression
ENSG00000113368 LMNB1 o--b
ENSG00000105216 LSM14A +-o
ENSG00000254085 LYSMD3 o++b
ENSG00000162441 LZIC NonAssociatedWithProgression
ENSG00000169032 MAP2K1 NonAssociatedWithProgression
ENSG00000139793 MBNL2 NonAssociatedWithProgression
ENSG00000011258 MBTD1 o+o
ENSG00000143995 MEIS1 o++b
ENSG00000151690 MFSD6 o++b
ENSG00000128585 MKLN1 NonAssociatedWithProgression
ENSG00000099875 MKNK2 o--b
ENSG00000130675 MNX1 -oo
ENSG00000115540 MOBKL3 o+o
ENSG00000159256 MORC3 NonAssociatedWithProgression
ENSG00000154889 MPPE1 o++a
ENSG00000198015 MRPL42 o--a
ENSG00000095002 MSH2 +oo
ENSG00000132613 MTSS1L ---
ENSG00000066933 MYO9A NonAssociatedWithProgression
ENSG00000151414 NEK7 NonAssociatedWithProgression
ENSG00000111641 NOP2 NonAssociatedWithProgression
ENSG00000108256 NUFIP2 --o
ENSG00000136243 NUPL2 o+-
ENSG00000164164 OTUD4 o+-
ENSG00000007168 PAFAH1B1 o+-
ENSG00000118482 PHF3 NonAssociatedWithProgression
ENSG00000186111 PIP5K1C ---
ENSG00000181690 PLAG1 oo-
ENSG00000104164 PLDN o++b
ENSG00000143190 POU2F1 NonAssociatedWithProgression
ENSG00000154845 PPP4R1 o++b
ENSG00000134186 PRPF38B ---
ENSG00000060749 QSER1 oo-
ENSG00000156675 RAB11FIP1 o--b
ENSG00000144566 RAB5A NonAssociatedWithProgression
ENSG00000166128 RAB8B o++b
ENSG00000136238 RAC1 NonAssociatedWithProgression
ENSG00000010017 RANBP9 +o+
ENSG00000129625 REEP5 NonAssociatedWithProgression
ENSG00000058729 RIOK2 ---
ENSG00000146083 RNF44 NonAssociatedWithProgression
ENSG00000146223 RPL7L1 ---
ENSG00000100784 RPS6KA5 NonAssociatedWithProgression
ENSG00000115310 RTN4 +oo
ENSG00000211456 SACM1L o+o
ENSG00000138758 SEPT11 o++a
ENSG00000134294 SLC38A2 oo-
ENSG00000066117 SMARCD1 NonAssociatedWithProgression
ENSG00000104450 SPAG1 o++b
ENSG00000158480 SPATA2 NonAssociatedWithProgression
ENSG00000134278 SPIRE1 o++a
ENSG00000138434 SSFA2 o--b
ENSG00000124356 STAMBP o--b
ENSG00000113387 SUB1 +-o
ENSG00000090447 TFAP4 o--b
ENSG00000118707 TGIF2 ---
ENSG00000205269 TMEM170B o++b
ENSG00000139324 TMTC3 o++b
ENSG00000143337 TOR1AIP1 o+-
ENSG00000124496 TRERF1 --o
ENSG00000119048 UBE2B o+-
ENSG00000109332 UBE2D3 NonAssociatedWithProgression
ENSG00000155313 USP25 o++b
ENSG00000101558 VAPA NonAssociatedWithProgression
ENSG00000101966 XIAP o+-
ENSG00000130227 XPO7 o--b
ENSG00000141664 ZCCHC2 -o-
ENSG00000005889 ZFX o--b
ENSG00000173276 ZNF295 oo-
ENSG00000189042 ZNF567 NonAssociatedWithProgression
ENSG00000180884 ZNF792 o++b
ENSG00000048405 ZNF800 NonAssociatedWithProgression