PEACHi
GeneSet chr9q34 (Chromosomal_Bands.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
--- -2.5 0.02637 86.0 19.0 10.53
o--a -2.4 0.028 86.0 21.0 12.21
DownRegulated -3.8 0.00441 86.0 66.0 50.79
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000097007 ABL1 o--a
ENSG00000169692 AGPAT2 ---
ENSG00000106992 AK1 NonAssociatedWithProgression
ENSG00000176248 ANAPC2 NonAssociatedWithProgression
ENSG00000136950 ARPC5L o--b
ENSG00000197070 ARRDC1 ---
ENSG00000148331 ASB6 o--a
ENSG00000169925 BRD3 ---
ENSG00000198917 C9orf114 o--a
ENSG00000160345 C9orf116 o--a
ENSG00000175854 C9orf119 NonAssociatedWithProgression
ENSG00000186193 C9orf140 ---
ENSG00000148362 C9orf142 ---
ENSG00000171159 C9orf16 o--a
ENSG00000196366 C9orf163 oo-
ENSG00000203993 C9orf37 o-o
ENSG00000136819 C9orf78 NonAssociatedWithProgression
ENSG00000196642 C9orf86 o--b
ENSG00000130559 CAMSAP1 +-o
ENSG00000171097 CCBL1 NonAssociatedWithProgression
ENSG00000170835 CEL o--a
ENSG00000148337 CIZ1 NonAssociatedWithProgression
ENSG00000188986 COBRA1 o--b
ENSG00000167113 COQ4 o--a
ENSG00000196730 DAPK1 o++a
ENSG00000125485 DDX31 NonAssociatedWithProgression
ENSG00000119522 DENND1A NonAssociatedWithProgression
ENSG00000106976 DNM1 --o
ENSG00000167130 DOLPP1 NonAssociatedWithProgression
ENSG00000136908 DPM2 o--a
ENSG00000176978 DPP7 o--a
ENSG00000107223 EDF1 o--b
ENSG00000172889 EGFL7 ---
ENSG00000181090 EHMT1 NonAssociatedWithProgression
ENSG00000130713 EXOSC2 o--b
ENSG00000167106 FAM102A ---
ENSG00000196814 FAM125B o--a
ENSG00000165716 FAM69B --o
ENSG00000148343 FAM73B NonAssociatedWithProgression
ENSG00000126882 FAM78A NonAssociatedWithProgression
ENSG00000119402 FBXW2 +-o
ENSG00000159069 FBXW5 o-o
ENSG00000187239 FNBP1 o--b
ENSG00000136877 FPGS o--a
ENSG00000107164 FUBP3 o-+
ENSG00000165219 GAPVD1 NonAssociatedWithProgression
ENSG00000136935 GOLGA1 o++b
ENSG00000148358 GPR107 +-o
ENSG00000160360 GPSM1 o-+
ENSG00000125484 GTF3C4 NonAssociatedWithProgression
ENSG00000148308 GTF3C5 o--a
ENSG00000148384 INPP5E o-+
ENSG00000196422 KIAA0649 o--a
ENSG00000136802 LRRC8A +oo
ENSG00000148356 LRSAM1 oo+
ENSG00000177239 MAN1B1 ---
ENSG00000119487 MAPKAP1 o--a
ENSG00000182154 MRPL41 ---
ENSG00000122140 MRPS2 o--b
ENSG00000136937 NCBP1 o+-
ENSG00000188566 NDOR1 o-o
ENSG00000148400 NOTCH1 o+o
ENSG00000095319 NUP188 ---
ENSG00000126883 NUP214 NonAssociatedWithProgression
ENSG00000136811 ODF2 o--b
ENSG00000119403 PHF19 NonAssociatedWithProgression
ENSG00000160447 PKN3 o-o
ENSG00000165688 PMPCA o--a
ENSG00000130714 POMT1 o++b
ENSG00000119383 PPP2R4 ---
ENSG00000119414 PPP6C o--b
ENSG00000136930 PSMB7 NonAssociatedWithProgression
ENSG00000095261 PSMD5 o++b
ENSG00000148334 PTGES2 NonAssociatedWithProgression
ENSG00000187024 PTRH1 --o
ENSG00000011454 RABGAP1 o--a
ENSG00000160271 RALGDS o--a
ENSG00000107263 RAPGEF1 NonAssociatedWithProgression
ENSG00000119446 RBM18 -+o
ENSG00000148300 REXO4 o--b
ENSG00000136942 RPL35 o--b
ENSG00000186350 RXRA ---
ENSG00000165689 SDCCAG3 o--a
ENSG00000119335 SET o--b
ENSG00000107290 SETX o+o
ENSG00000148341 SH3GLB2 ---
ENSG00000148339 SLC25A25 ---
ENSG00000165684 SNAPC4 o--b
ENSG00000252542 SNORD36C -o-
ENSG00000197694 SPTAN1 NonAssociatedWithProgression
ENSG00000176101 SSNA1 NonAssociatedWithProgression
ENSG00000160408 ST6GALNAC6 ---
ENSG00000136854 STXBP1 -oo
ENSG00000244187 TMEM141 o--b
ENSG00000223551 TMSL4 NonAssociatedWithProgression
ENSG00000136816 TOR1B +o+
ENSG00000160404 TOR2A ---
ENSG00000127191 TRAF2 o--b
ENSG00000167112 TRUB2 o--a
ENSG00000165699 TSC1 NonAssociatedWithProgression
ENSG00000125482 TTF1 o+-
ENSG00000130717 UCK1 o--a
ENSG00000136878 USP20 NonAssociatedWithProgression
ENSG00000160293 VAV2 oo+
ENSG00000119333 WDR34 o--b
ENSG00000196363 WDR5 ---
ENSG00000148399 WDR85 ---
ENSG00000171448 ZBTB26 o++a
ENSG00000160446 ZDHHC12 ---
ENSG00000165724 ZMYND19 o--a