PEACHi
GeneSet chr6p21 (Chromosomal_Bands.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--a -3.5 0.0089 133.0 33.0 18.89
o--b -2.1 0.03989 133.0 28.0 18.37
AllGenesAssociatedWithProgression -3.1 0.02948 160.0 133.0 116.57
DownRegulated -8.0 0.0 133.0 108.0 78.54
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000204574 ABCF1 o--b
ENSG00000204310 AGPAT1 o--b
ENSG00000204472 AIF1 o--a
ENSG00000064999 ANKS1A o+-
ENSG00000204444 APOM o--a
ENSG00000213760 ATP6V1G2 o++b
ENSG00000030110 BAK1 o--b
ENSG00000198563 BAT1 o--a
ENSG00000204469 BAT2 ---
ENSG00000204463 BAT3 ---
ENSG00000204438 BAT4 o--a
ENSG00000204427 BAT5 +o+
ENSG00000204256 BRD2 o--b
ENSG00000096070 BRPF3 o-+
ENSG00000183826 BTBD9 oo+
ENSG00000112578 BYSL o--b
ENSG00000166278 C2 NonAssociatedWithProgression
ENSG00000186577 C6orf1 NonAssociatedWithProgression
ENSG00000196821 C6orf106 o--a
ENSG00000112667 C6orf108 o--a
ENSG00000137288 C6orf125 o--a
ENSG00000198937 C6orf129 oo+
ENSG00000124596 C6orf130 o-o
ENSG00000204564 C6orf136 -+o
ENSG00000228727 C6orf26 NonAssociatedWithProgression
ENSG00000204439 C6orf47 ---
ENSG00000204387 C6orf48 o--a
ENSG00000112167 C6orf64 NonAssociatedWithProgression
ENSG00000157343 C6orf81 ---
ENSG00000198663 C6orf89 ---
ENSG00000112576 CCND3 o--b
ENSG00000124762 CDKN1A oo-
ENSG00000204248 COL11A2 --o
ENSG00000204435 CSNK2B o--a
ENSG00000044090 CUL7 ---
ENSG00000112514 CUTA o-o
ENSG00000204209 DAXX o--b
ENSG00000023892 DEF6 o--a
ENSG00000204560 DHX16 NonAssociatedWithProgression
ENSG00000204348 DOM3Z o--a
ENSG00000204371 EHMT2 o--b
ENSG00000012660 ELOVL5 NonAssociatedWithProgression
ENSG00000146192 FGD2 -+o
ENSG00000096060 FKBP5 o--b
ENSG00000204315 FKBPL o--b
ENSG00000137312 FLOT1 --o
ENSG00000137166 FOXP4 +-o
ENSG00000124767 GLO1 o-o
ENSG00000112312 GMNN NonAssociatedWithProgression
ENSG00000204590 GNL1 o--a
ENSG00000213654 GPSM3 o--b
ENSG00000172432 GTPBP2 o--a
ENSG00000241549 GUSBL1 NonAssociatedWithProgression
ENSG00000187837 HIST1H1C o--b
ENSG00000124575 HIST1H1D ---
ENSG00000197459 HIST1H2BH oo-
ENSG00000206503 HLA-A +-o
ENSG00000234745 HLA-B o-+
ENSG00000204525 HLA-C o-+
ENSG00000204592 HLA-E +-o
ENSG00000137309 HMGA1 o--b
ENSG00000182952 HMGN4 o+o
ENSG00000204228 HSD17B8 o--b
ENSG00000204389 HSPA1A o--b
ENSG00000204388 HSPA1B o--b
ENSG00000096433 ITPR3 o-o
ENSG00000112078 KCTD20 o--a
ENSG00000112624 KIAA0240 o++b
ENSG00000146112 KIAA1949 ---
ENSG00000164627 KIF6 NonAssociatedWithProgression
ENSG00000137171 KLC4 NonAssociatedWithProgression
ENSG00000124702 KLHDC3 o--a
ENSG00000161904 LEMD2 o--a
ENSG00000204392 LSM2 --o
ENSG00000226979 LTA NonAssociatedWithProgression
ENSG00000227507 LTB -o-
ENSG00000240053 LY6G5B ---
ENSG00000204428 LY6G5C o--b
ENSG00000124688 MAD2L1BP o-o
ENSG00000112062 MAPK14 o++b
ENSG00000124733 MEA1 NonAssociatedWithProgression
ENSG00000204516 MICB o-o
ENSG00000112651 MRPL2 o-o
ENSG00000048544 MRPS10 -o-
ENSG00000096080 MRPS18A NonAssociatedWithProgression
ENSG00000204568 MRPS18B o--a
ENSG00000204410 MSH5 NonAssociatedWithProgression
ENSG00000146085 MUT NonAssociatedWithProgression
ENSG00000096264 NCR2 ---
ENSG00000204386 NEU1 NonAssociatedWithProgression
ENSG00000146232 NFKBIE o--b
ENSG00000137404 NRM o--a
ENSG00000112664 NUDT3 o--a
ENSG00000124507 PACSIN1 -+o
ENSG00000204304 PBX2 o--a
ENSG00000204220 PFDN6 ---
ENSG00000112511 PHF1 o--b
ENSG00000137193 PIM1 o--b
ENSG00000112033 PPARD ---
ENSG00000137168 PPIL1 NonAssociatedWithProgression
ENSG00000204569 PPP1R10 o--b
ENSG00000204619 PPP1R11 o--b
ENSG00000112640 PPP2R5D o--a
ENSG00000221988 PPT2 o--a
ENSG00000204576 PRR3 o--b
ENSG00000204314 PRRT1 o-o
ENSG00000204264 PSMB8 o--b
ENSG00000240065 PSMB9 o-o
ENSG00000204540 PSORS1C1 +o+
ENSG00000171611 PTCRA ---
ENSG00000112655 PTK7 o--a
ENSG00000236603 RANP1 -o-
ENSG00000204356 RDBP o-o
ENSG00000237441 RGL2 ---
ENSG00000204227 RING1 o--a
ENSG00000204308 RNF5 o--b
ENSG00000112130 RNF8 NonAssociatedWithProgression
ENSG00000198755 RPL10A NonAssociatedWithProgression
ENSG00000181524 RPL24P4 o-o
ENSG00000146223 RPL7L1 ---
ENSG00000241370 RPP21 o-o
ENSG00000124614 RPS10 NonAssociatedWithProgression
ENSG00000231500 RPS18 o-o
ENSG00000124813 RUNX2 +oo
ENSG00000204231 RXRB NonAssociatedWithProgression
ENSG00000204351 SKIV2L -oo
ENSG00000112759 SLC29A1 o--b
ENSG00000112473 SLC39A7 o-o
ENSG00000201754 SNORD52 NonAssociatedWithProgression
ENSG00000124562 SNRPC o--a
ENSG00000096063 SRPK1 o--a
ENSG00000204344 STK19 o-+
ENSG00000112079 STK38 o--b
ENSG00000196284 SUPT3H ---
ENSG00000197283 SYNGAP1 o+o
ENSG00000064995 TAF11 o--b
ENSG00000231925 TAPBP ---
ENSG00000124659 TBCC o--a
ENSG00000112561 TFEB ---
ENSG00000137221 TJAP1 o--a
ENSG00000137216 TMEM63B ---
ENSG00000146072 TNFRSF21 o--a
ENSG00000065308 TRAM2 o-o
ENSG00000124496 TRERF1 --o
ENSG00000234127 TRIM26 +-o
ENSG00000204599 TRIM39 oo-
ENSG00000196230 TUBB o--a
ENSG00000024048 UBR2 o++a
ENSG00000124602 UNC5CL NonAssociatedWithProgression
ENSG00000204394 VARS o--a
ENSG00000223501 VPS52 ---
ENSG00000124571 XPO5 o+o
ENSG00000137207 YIPF3 o--a
ENSG00000236104 ZBTB22 o-o
ENSG00000213588 ZBTB9 o--a
ENSG00000197279 ZNF165 NonAssociatedWithProgression
ENSG00000096654 ZNF184 +o+
ENSG00000010244 ZNF207 NonAssociatedWithProgression
ENSG00000065029 ZNF76 NonAssociatedWithProgression
ENSG00000066379 ZNRD1 NonAssociatedWithProgression