PEACHi
GeneSet chr1p36 (Chromosomal_Bands.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
--o -2.5 0.02637 118.0 9.0 3.62
o--b -2.9 0.01693 118.0 28.0 16.3
DownRegulated -4.2 0.00193 118.0 89.0 69.68
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000097021 ACOT7 o--a
ENSG00000177674 AGTRAP --o
ENSG00000126705 AHDC1 o--b
ENSG00000117362 APH1A o--a
ENSG00000175279 APITD1 NonAssociatedWithProgression
ENSG00000117713 ARID1A o--b
ENSG00000197785 ATAD3A o--a
ENSG00000160072 ATAD3B o--a
ENSG00000215915 ATAD3C --o
ENSG00000175756 AURKAIP1 ---
ENSG00000176022 B3GALT6 o-o
ENSG00000057757 C1orf128 NonAssociatedWithProgression
ENSG00000204377 C1orf134 NonAssociatedWithProgression
ENSG00000173436 C1orf151 --o
ENSG00000131591 C1orf159 o--a
ENSG00000198912 C1orf174 NonAssociatedWithProgression
ENSG00000162490 C1orf187 +o+
ENSG00000117616 C1orf63 NonAssociatedWithProgression
ENSG00000162585 C1orf86 o-o
ENSG00000132881 C1orf89 NonAssociatedWithProgression
ENSG00000160055 C1orf91 o--b
ENSG00000157870 C1orf93 o--a
ENSG00000162545 CAMK2N1 o-+
ENSG00000171735 CAMTA1 o-o
ENSG00000077549 CAPZB o--b
ENSG00000130940 CASZ1 o++b
ENSG00000130695 CCDC21 o--a
ENSG00000221978 CCNL2 NonAssociatedWithProgression
ENSG00000169442 CD52 o--a
ENSG00000070831 CDC42 +oo
ENSG00000011021 CLCN6 o+o
ENSG00000171603 CLSTN1 NonAssociatedWithProgression
ENSG00000241563 CORT NonAssociatedWithProgression
ENSG00000127054 CPSF3L ---
ENSG00000058453 CROCC --o
ENSG00000197312 DDI2 NonAssociatedWithProgression
ENSG00000244038 DDOST o--a
ENSG00000160049 DFFA NonAssociatedWithProgression
ENSG00000007923 DNAJC11 o--a
ENSG00000116138 DNAJC16 NonAssociatedWithProgression
ENSG00000107404 DVL1 o--b
ENSG00000007968 E2F2 o--a
ENSG00000142634 EFHD2 o-o
ENSG00000075151 EIF4G3 NonAssociatedWithProgression
ENSG00000074800 ENO1 o--b
ENSG00000116285 ERRFI1 o++b
ENSG00000171824 EXOSC10 NonAssociatedWithProgression
ENSG00000117640 FAM54B NonAssociatedWithProgression
ENSG00000037637 FBXO42 --o
ENSG00000132879 FBXO44 -+o
ENSG00000000938 FGR o--b
ENSG00000117308 GALE o--a
ENSG00000078369 GNB1 o--a
ENSG00000180758 GPR157 o-o
ENSG00000181773 GPR3 ---
ENSG00000117262 GPR89A NonAssociatedWithProgression
ENSG00000197245 GRRP1 -+o
ENSG00000049239 H6PD o-o
ENSG00000188290 HES4 o--b
ENSG00000197921 HES5 o--a
ENSG00000117305 HMGCL --o
ENSG00000198830 HMGN2 NonAssociatedWithProgression
ENSG00000127483 HP1BP3 o+-
ENSG00000116237 ICMT o--b
ENSG00000117318 ID3 ---
ENSG00000187608 ISG15 o-+
ENSG00000069424 KCNAB2 ---
ENSG00000127463 KIAA0090 NonAssociatedWithProgression
ENSG00000116198 KIAA0562 o++b
ENSG00000116685 KIAA2013 o--b
ENSG00000054523 KIF1B o++a
ENSG00000075945 KIFAP3 NonAssociatedWithProgression
ENSG00000187961 KLHL17 o-o
ENSG00000162413 KLHL21 NonAssociatedWithProgression
ENSG00000143418 LASS2 o--b
ENSG00000123684 LPGAT1 o++b
ENSG00000130764 LRRC47 NonAssociatedWithProgression
ENSG00000169641 LUZP1 --o
ENSG00000011009 LYPLA2 o--a
ENSG00000162441 LZIC NonAssociatedWithProgression
ENSG00000116670 MAD2L2 o--a
ENSG00000162959 MEMO1 o+-
ENSG00000116688 MFN2 o--b
ENSG00000154305 MIA3 NonAssociatedWithProgression
ENSG00000197530 MIB2 ---
ENSG00000116151 MORN1 -o-
ENSG00000242485 MRPL20 NonAssociatedWithProgression
ENSG00000177000 MTHFR o-o
ENSG00000008130 NADK o--a
ENSG00000219481 NBPF1 NonAssociatedWithProgression
ENSG00000142794 NBPF3 o--a
ENSG00000157191 NECAP2 o-o
ENSG00000188976 NOC2L o--b
ENSG00000162408 NOL9 o--b
ENSG00000131697 NPHP4 ---
ENSG00000169914 OTUD3 o-o
ENSG00000157881 PANK4 o--b
ENSG00000116288 PARK7 o--b
ENSG00000157911 PEX10 ---
ENSG00000142655 PEX14 o++b
ENSG00000142657 PGD NonAssociatedWithProgression
ENSG00000116273 PHF13 NonAssociatedWithProgression
ENSG00000060642 PIGV NonAssociatedWithProgression
ENSG00000171608 PIK3CD o++a
ENSG00000083444 PLOD1 --o
ENSG00000189266 PNRC2 o+o
ENSG00000116731 PRDM2 -oo
ENSG00000142875 PRKACB o--b
ENSG00000067606 PRKCZ ---
ENSG00000169972 PUSL1 o--a
ENSG00000118873 RAB3GAP2 ---
ENSG00000180198 RCC1 o--a
ENSG00000179051 RCC2 o--b
ENSG00000157916 RER1 -+o
ENSG00000142599 RERE o++b
ENSG00000142676 RPL11 o--b
ENSG00000116251 RPL22 +-o
ENSG00000215695 RSC1A1 +-o
ENSG00000020633 RUNX3 o--b
ENSG00000162572 SCNN1D --o
ENSG00000078808 SDF4 ---
ENSG00000117118 SDHB NonAssociatedWithProgression
ENSG00000162430 SEPN1 oo+
ENSG00000171612 SLC25A33 -+o
ENSG00000215790 SLC35E2 -oo
ENSG00000090020 SLC9A1 o--b
ENSG00000242125 SNHG3 o--b
ENSG00000065526 SPEN o--b
ENSG00000171621 SPSB1 o--a
ENSG00000116649 SRM o--b
ENSG00000133226 SRRM1 o--b
ENSG00000160075 SSU72 o--a
ENSG00000117614 SYF2 NonAssociatedWithProgression
ENSG00000120948 TARDBP o--a
ENSG00000011007 TCEB3 NonAssociatedWithProgression
ENSG00000041988 THAP3 o--a
ENSG00000183726 TMEM50A o+o
ENSG00000204178 TMEM57 +-o
ENSG00000157873 TNFRSF14 o-+
ENSG00000160087 UBE2J2 ---
ENSG00000130939 UBE4B o+o
ENSG00000120942 UBIAD1 ---
ENSG00000090686 USP48 o+-
ENSG00000049245 VAMP3 NonAssociatedWithProgression
ENSG00000048707 VPS13D ---
ENSG00000116213 WDR8 o--b
ENSG00000116809 ZBTB17 o--b
ENSG00000184677 ZBTB40 NonAssociatedWithProgression
ENSG00000204859 ZBTB48 o--b
ENSG00000204160 ZDHHC18 ---
ENSG00000125945 ZNF436 +o+