PEACHi
GeneSet chr19q13 (Chromosomal_Bands.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
--- -5.9 2.1E-4 208.0 49.0 25.46
o--a -6.8 4.0E-5 208.0 57.0 29.54
DownRegulated -6.8 1.0E-5 208.0 157.0 122.83
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000123815 ADCK4 o--a
ENSG00000204673 AKT1S1 ---
ENSG00000105221 AKT2 o--a
ENSG00000161618 ALDH16A1 NonAssociatedWithProgression
ENSG00000239382 ALKBH6 ---
ENSG00000105186 ANKRD27 NonAssociatedWithProgression
ENSG00000196961 AP2A1 ---
ENSG00000042753 AP2S1 o--b
ENSG00000076928 ARHGEF1 o--b
ENSG00000169136 ATF5 ---
ENSG00000105327 BBC3 +oo
ENSG00000105552 BCAT2 o--a
ENSG00000248098 BCKDHA o-o
ENSG00000126453 BCL2L12 o-o
ENSG00000069399 BCL3 NonAssociatedWithProgression
ENSG00000131943 C19orf12 NonAssociatedWithProgression
ENSG00000160392 C19orf47 ---
ENSG00000167747 C19orf48 oo-
ENSG00000063180 CA11 o-o
ENSG00000160014 CALM3 o--a
ENSG00000182472 CAPN12 o+o
ENSG00000126247 CAPNS1 o++a
ENSG00000105483 CARD8 o++a
ENSG00000173581 CCDC106 ---
ENSG00000121289 CCDC123 --o
ENSG00000105321 CCDC9 o--b
ENSG00000142039 CCDC97 ---
ENSG00000105369 CD79A ---
ENSG00000130724 CHMP2A o--a
ENSG00000079432 CIC NonAssociatedWithProgression
ENSG00000104853 CLPTM1 o--a
ENSG00000088038 CNOT3 o--a
ENSG00000126267 COX6B1 NonAssociatedWithProgression
ENSG00000105516 DBP ---
ENSG00000160570 DEDD2 o--a
ENSG00000134815 DHX34 -o-
ENSG00000104936 DMPK ---
ENSG00000185800 DMWD ---
ENSG00000011332 DPF1 o--a
ENSG00000178904 DPY19L3 NonAssociatedWithProgression
ENSG00000104823 ECH1 o--a
ENSG00000171570 EGLN2 NonAssociatedWithProgression
ENSG00000125746 EML2 ---
ENSG00000142227 EMP3 o--b
ENSG00000063245 EPN1 ---
ENSG00000104884 ERCC2 ---
ENSG00000105722 ERF ---
ENSG00000105755 ETHE1 o-o
ENSG00000077348 EXOSC5 o--a
ENSG00000130244 FAM98C NonAssociatedWithProgression
ENSG00000105202 FBL o-o
ENSG00000104835 FBXO17 ---
ENSG00000177051 FBXO46 o-o
ENSG00000090920 FCGBP o++a
ENSG00000104870 FCGRT o-o
ENSG00000179943 FIZ1 ---
ENSG00000181027 FKRP o+o
ENSG00000090554 FLT3LG +o+
ENSG00000125740 FOSB +-o
ENSG00000087086 FTL o--a
ENSG00000010361 FUZ ---
ENSG00000142252 GEMIN7 o--b
ENSG00000063169 GLTSCR1 ---
ENSG00000130755 GMFG NonAssociatedWithProgression
ENSG00000105220 GPI +-o
ENSG00000160007 GRLF1 +o+
ENSG00000105447 GRWD1 ---
ENSG00000105723 GSK3A ---
ENSG00000104812 GYS1 o--a
ENSG00000126264 HCST o-+
ENSG00000181666 HKR1 o--b
ENSG00000133265 HSPBP1 o--a
ENSG00000104951 IL4I1 NonAssociatedWithProgression
ENSG00000170604 IRF2BP1 ---
ENSG00000126456 IRF3 o--a
ENSG00000063241 ISOC2 o--b
ENSG00000086544 ITPKC NonAssociatedWithProgression
ENSG00000161677 JOSD2 o--a
ENSG00000099337 KCNK6 ---
ENSG00000105438 KDELR1 NonAssociatedWithProgression
ENSG00000126259 KIRREL2 ---
ENSG00000167748 KLK1 +-o
ENSG00000129437 KLK14 NonAssociatedWithProgression
ENSG00000118162 KPTN ---
ENSG00000167613 LAIR1 -o-
ENSG00000105617 LENG1 ---
ENSG00000167615 LENG8 o--a
ENSG00000182909 LENG9 ---
ENSG00000105486 LIG1 o--a
ENSG00000142235 LMTK3 NonAssociatedWithProgression
ENSG00000126243 LRFN3 o-o
ENSG00000105216 LSM14A +-o
ENSG00000130758 MAP3K10 o--a
ENSG00000104814 MAP4K1 NonAssociatedWithProgression
ENSG00000007047 MARK4 ---
ENSG00000104973 MED25 NonAssociatedWithProgression
ENSG00000128626 MRPS12 o--a
ENSG00000179820 MYADM oo-
ENSG00000099326 MZF1 o--a
ENSG00000170906 NDUFA3 o--a
ENSG00000104825 NFKBIB ---
ENSG00000142546 NOSIP o--a
ENSG00000130751 NPAS1 NonAssociatedWithProgression
ENSG00000131408 NR1H2 o--a
ENSG00000104805 NUCB1 --o
ENSG00000213965 NUDT19 o++a
ENSG00000213024 NUP62 o--a
ENSG00000125741 OPA3 ---
ENSG00000079462 PAFAH1B3 o--a
ENSG00000126249 PDCD2L NonAssociatedWithProgression
ENSG00000124299 PEPD o--b
ENSG00000176531 PHLDB3 ---
ENSG00000105647 PIK3R2 o--a
ENSG00000105223 PLD3 ---
ENSG00000090924 PLEKHG2 o--a
ENSG00000062822 POLD1 o--a
ENSG00000105171 POP4 NonAssociatedWithProgression
ENSG00000177380 PPFIA3 ---
ENSG00000104881 PPP1R13L o--b
ENSG00000087074 PPP1R15A ---
ENSG00000105568 PPP2R1A o--b
ENSG00000011485 PPP5C o--a
ENSG00000126457 PRMT1 o--b
ENSG00000105618 PRPF31 NonAssociatedWithProgression
ENSG00000126464 PRR12 ---
ENSG00000105227 PRX NonAssociatedWithProgression
ENSG00000205155 PSENEN NonAssociatedWithProgression
ENSG00000013275 PSMC4 NonAssociatedWithProgression
ENSG00000099341 PSMD8 o--b
ENSG00000104960 PTOV1 o-o
ENSG00000011478 QPCTL ---
ENSG00000167578 RAB4B ---
ENSG00000105404 RABAC1 o--a
ENSG00000105538 RASIP1 o-o
ENSG00000104856 RELB o--b
ENSG00000142541 RPL13A NonAssociatedWithProgression
ENSG00000108107 RPL28 o--b
ENSG00000142534 RPS11 o--a
ENSG00000105193 RPS16 o--b
ENSG00000105372 RPS19 -o-
ENSG00000083845 RPS5 o--a
ENSG00000170889 RPS9 o--b
ENSG00000125744 RTN2 o--a
ENSG00000183207 RUVBL2 o--a
ENSG00000142230 SAE1 o-o
ENSG00000179134 SAMD4B ---
ENSG00000178980 SEPW1 o--a
ENSG00000197019 SERTAD1 ---
ENSG00000167565 SERTAD3 NonAssociatedWithProgression
ENSG00000160410 SHKBP1 o--a
ENSG00000105738 SIPA1L3 -+o
ENSG00000068903 SIRT2 --o
ENSG00000177045 SIX5 NonAssociatedWithProgression
ENSG00000105281 SLC1A5 o--b
ENSG00000083807 SLC27A5 o--a
ENSG00000220988 SNORD88C o--a
ENSG00000077312 SNRPA o--a
ENSG00000125743 SNRPD2 o--a
ENSG00000063176 SPHK2 o-o
ENSG00000160460 SPTBN4 NonAssociatedWithProgression
ENSG00000090372 STRN4 o--b
ENSG00000196235 SUPT5H o--b
ENSG00000133247 SUV420H2 o--a
ENSG00000125755 SYMPK ---
ENSG00000105619 TFPT -oo
ENSG00000105329 TGFB1 o--a
ENSG00000161277 THAP8 -+o
ENSG00000105197 TIMM50 ---
ENSG00000105677 TMEM147 ---
ENSG00000130748 TMEM160 o-o
ENSG00000142046 TMEM91 ---
ENSG00000130204 TOMM40 o--a
ENSG00000007255 TRAPPC6A o--b
ENSG00000130726 TRIM28 o--a
ENSG00000121297 TSHZ3 +oo
ENSG00000161265 U2AF1L4 o-o
ENSG00000063244 U2AF2 ---
ENSG00000130725 UBE2M o--a
ENSG00000108106 UBE2S o--a
ENSG00000105698 USF2 ---
ENSG00000105053 VRK3 o--a
ENSG00000075702 WDR62 ---
ENSG00000142279 WTIP NonAssociatedWithProgression
ENSG00000073050 XRCC1 ---
ENSG00000128016 ZFP36 o--b
ENSG00000196646 ZNF136 NonAssociatedWithProgression
ENSG00000167635 ZNF146 +o+
ENSG00000204920 ZNF155 o--a
ENSG00000197841 ZNF181 o++b
ENSG00000121417 ZNF211 oo+
ENSG00000159885 ZNF222 o++b
ENSG00000186019 ZNF224 +o+
ENSG00000167380 ZNF226 +o+
ENSG00000131115 ZNF227 NonAssociatedWithProgression
ENSG00000159915 ZNF233 o++a
ENSG00000159917 ZNF235 o+o
ENSG00000254004 ZNF260 NonAssociatedWithProgression
ENSG00000083844 ZNF264 o--a
ENSG00000171606 ZNF274 o--a
ENSG00000198538 ZNF28 NonAssociatedWithProgression
ENSG00000186026 ZNF284 o++b
ENSG00000131845 ZNF304 +o+
ENSG00000182986 ZNF320 o++b
ENSG00000249471 ZNF324B o--a
ENSG00000130844 ZNF331 o+o
ENSG00000161298 ZNF382 o+-
ENSG00000170954 ZNF415 o++b
ENSG00000083817 ZNF416 o-+
ENSG00000197050 ZNF420 NonAssociatedWithProgression
ENSG00000131116 ZNF428 o-o
ENSG00000167685 ZNF444 o-o
ENSG00000124459 ZNF45 o+o
ENSG00000204604 ZNF468 o+o
ENSG00000142528 ZNF473 o--b
ENSG00000198464 ZNF480 -o-
ENSG00000168813 ZNF507 NonAssociatedWithProgression
ENSG00000203326 ZNF525 NonAssociatedWithProgression
ENSG00000167625 ZNF526 NonAssociatedWithProgression
ENSG00000189164 ZNF527 o++a
ENSG00000167555 ZNF528 o++a
ENSG00000186020 ZNF529 o--a
ENSG00000198131 ZNF544 NonAssociatedWithProgression
ENSG00000188785 ZNF548 +o+
ENSG00000178935 ZNF552 o--a
ENSG00000186017 ZNF566 NonAssociatedWithProgression
ENSG00000189042 ZNF567 NonAssociatedWithProgression
ENSG00000198453 ZNF568 -+o
ENSG00000196437 ZNF569 NonAssociatedWithProgression
ENSG00000180479 ZNF571 NonAssociatedWithProgression
ENSG00000105732 ZNF574 ---
ENSG00000124444 ZNF576 NonAssociatedWithProgression
ENSG00000218891 ZNF579 o-o
ENSG00000213015 ZNF580 o--a
ENSG00000171425 ZNF581 o--a
ENSG00000171574 ZNF584 NonAssociatedWithProgression
ENSG00000083828 ZNF586 oo-
ENSG00000166704 ZNF606 o++b
ENSG00000198182 ZNF607 o+o
ENSG00000167554 ZNF610 o++b
ENSG00000213020 ZNF611 NonAssociatedWithProgression
ENSG00000142556 ZNF614 NonAssociatedWithProgression
ENSG00000197619 ZNF615 NonAssociatedWithProgression
ENSG00000204611 ZNF616 NonAssociatedWithProgression
ENSG00000197483 ZNF628 NonAssociatedWithProgression
ENSG00000083814 ZNF671 NonAssociatedWithProgression
ENSG00000167562 ZNF701 NonAssociatedWithProgression
ENSG00000160336 ZNF761 NonAssociatedWithProgression
ENSG00000196417 ZNF765 o+o
ENSG00000196214 ZNF766 NonAssociatedWithProgression
ENSG00000197128 ZNF772 oo+
ENSG00000152443 ZNF776 o++b
ENSG00000197782 ZNF780A -+o
ENSG00000196381 ZNF781 o++b
ENSG00000179922 ZNF784 o--b
ENSG00000142409 ZNF787 ---
ENSG00000197863 ZNF790 o++b
ENSG00000180884 ZNF792 o++b
ENSG00000083842 ZNF8 o--a
ENSG00000167766 ZNF83 o++b
ENSG00000182318 ZSCAN22 -+o
ENSG00000180532 ZSCAN4 o++a