PEACHi
GeneSet chr17q21 (Chromosomal_Bands.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
DownRegulated -2.9 0.02054 88.0 65.0 51.97
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000108825 AARSD1 -o-
ENSG00000132142 ACACA o--b
ENSG00000131473 ACLY o--a
ENSG00000121057 AKAP1 o--b
ENSG00000154945 ANKRD40 NonAssociatedWithProgression
ENSG00000131480 AOC2 o+-
ENSG00000131471 AOC3 NonAssociatedWithProgression
ENSG00000062725 APPBP2 o-o
ENSG00000225485 ARHGAP23 o--b
ENSG00000159314 ARHGAP27 o--b
ENSG00000159199 ATP5G1 NonAssociatedWithProgression
ENSG00000033627 ATP6V0A1 ---
ENSG00000087152 ATXN7L3 o--a
ENSG00000126581 BECN1 oo+
ENSG00000012048 BRCA1 NonAssociatedWithProgression
ENSG00000125319 C17orf53 o-o
ENSG00000168597 C17orf65 ---
ENSG00000067191 CACNB1 ---
ENSG00000136436 CALCOCO2 NonAssociatedWithProgression
ENSG00000108468 CBX1 o++a
ENSG00000180329 CCDC43 o+o
ENSG00000183978 CCDC56 --o
ENSG00000094804 CDC6 NonAssociatedWithProgression
ENSG00000108465 CDK5RAP3 NonAssociatedWithProgression
ENSG00000173786 CNP ---
ENSG00000172992 DCAKD o--b
ENSG00000108654 DDX5 NonAssociatedWithProgression
ENSG00000141141 DDX52 NonAssociatedWithProgression
ENSG00000067596 DHX8 o--a
ENSG00000108861 DUSP3 o-+
ENSG00000108883 EFTUD2 -o-
ENSG00000173812 EIF1 +-o
ENSG00000108799 EZH1 NonAssociatedWithProgression
ENSG00000121104 FAM117A o--b
ENSG00000108306 FBXL20 NonAssociatedWithProgression
ENSG00000184922 FMNL1 NonAssociatedWithProgression
ENSG00000180340 FZD2 o--b
ENSG00000141349 G6PC3 o--b
ENSG00000167925 GHDC o--a
ENSG00000182963 GJC1 +o+
ENSG00000030582 GRN o-o
ENSG00000186834 HEXIM1 o--a
ENSG00000168517 HEXIM2 NonAssociatedWithProgression
ENSG00000120093 HOXB3 oo+
ENSG00000182742 HOXB4 NonAssociatedWithProgression
ENSG00000120087 HOXB7 +o+
ENSG00000173801 JUP o-o
ENSG00000120071 KIAA1267 oo-
ENSG00000178502 KLHL11 NonAssociatedWithProgression
ENSG00000108424 KPNB1 o--a
ENSG00000186395 KRT10 o--b
ENSG00000108829 LRRC59 o--a
ENSG00000161654 LSM12 o--b
ENSG00000006062 MAP3K14 ---
ENSG00000186868 MAPT o++a
ENSG00000108292 MLLT6 o--a
ENSG00000108788 MLX o--b
ENSG00000159111 MRPL10 o--a
ENSG00000108826 MRPL27 -+o
ENSG00000174100 MRPL45 o--a
ENSG00000136504 MYST2 NonAssociatedWithProgression
ENSG00000188554 NBR1 --o
ENSG00000082641 NFE2L1 NonAssociatedWithProgression
ENSG00000168256 NKIRAS2 o--a
ENSG00000239672 NME1 o--a
ENSG00000243678 NME1-NME2 NonAssociatedWithProgression
ENSG00000011052 NME2 NonAssociatedWithProgression
ENSG00000136448 NMT1 o--b
ENSG00000073969 NSF o++a
ENSG00000141698 NT5C3L -+o
ENSG00000141179 PCTP ---
ENSG00000108733 PEX12 o++b
ENSG00000167085 PHB NonAssociatedWithProgression
ENSG00000161381 PLXDC1 -oo
ENSG00000108439 PNPO o--a
ENSG00000108819 PPP1R9B -+o
ENSG00000131470 PSMC3IP o-o
ENSG00000108344 PSMD3 ---
ENSG00000108774 RAB5C NonAssociatedWithProgression
ENSG00000108352 RAPGEFL1 o--a
ENSG00000131469 RPL27 NonAssociatedWithProgression
ENSG00000204652 RPS26P8 --o
ENSG00000136444 RSAD1 NonAssociatedWithProgression
ENSG00000198863 RUNDC1 NonAssociatedWithProgression
ENSG00000141295 SCRN2 NonAssociatedWithProgression
ENSG00000141293 SKAP1 ---
ENSG00000121073 SLC35B1 o-o
ENSG00000073584 SMARCE1 -oo
ENSG00000159210 SNF8 o--a
ENSG00000002919 SNX11 o-o
ENSG00000167182 SP2 +oo
ENSG00000008294 SPAG9 oo-
ENSG00000121067 SPOP o--b
ENSG00000168610 STAT3 o--b
ENSG00000213246 SUPT4H1 o--a
ENSG00000178691 SUZ12 o--b
ENSG00000197681 TBC1D3 +o+
ENSG00000234972 TBC1D3C +o+
ENSG00000091947 TMEM101 oo+
ENSG00000167920 TMEM99 oo+
ENSG00000168591 TMUB2 o--a
ENSG00000131746 TNS4 NonAssociatedWithProgression
ENSG00000141232 TOB1 NonAssociatedWithProgression
ENSG00000131747 TOP2A o--b
ENSG00000131462 TUBG1 --o
ENSG00000037042 TUBG2 o-+
ENSG00000159202 UBE2Z o-+
ENSG00000108312 UBTF o--a
ENSG00000011260 UTP18 NonAssociatedWithProgression
ENSG00000108828 VAT1 o--b
ENSG00000131475 VPS25 ---
ENSG00000126562 WNK4 o--b
ENSG00000108379 WNT3 o+o
ENSG00000015532 XYLT2 --o
ENSG00000198740 ZNF652 o-o
ENSG00000108278 ZNHIT3 o-o