PEACHi
GeneSet chr12q24 (Chromosomal_Bands.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
--o -2.3 0.03202 70.0 6.0 2.15
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000150967 ABCB9 o--a
ENSG00000122971 ACADS --o
ENSG00000089053 ANAPC5 o++a
ENSG00000076513 ANKRD13A o-o
ENSG00000182196 ARL6IP4 o--b
ENSG00000111229 ARPC3 NonAssociatedWithProgression
ENSG00000185344 ATP6V0A2 o-o
ENSG00000110987 BCL7A -o-
ENSG00000089234 BRAP NonAssociatedWithProgression
ENSG00000204856 C12orf24 o+-
ENSG00000157895 C12orf43 o-o
ENSG00000234608 C12orf47 o--a
ENSG00000111412 C12orf49 o-o
ENSG00000173064 C12orf51 o++b
ENSG00000139405 C12orf52 NonAssociatedWithProgression
ENSG00000110931 CAMKK2 NonAssociatedWithProgression
ENSG00000135127 CCDC64 o+o
ENSG00000119242 CCDC92 ---
ENSG00000111328 CDK2AP1 --o
ENSG00000072609 CHFR o-o
ENSG00000122966 CIT +-o
ENSG00000110871 COQ5 -+o
ENSG00000110880 CORO1C +oo
ENSG00000111775 COX6A1 o-+
ENSG00000111364 DDX55 -o-
ENSG00000150990 DHX37 o--b
ENSG00000184047 DIABLO o--a
ENSG00000197653 DNAH10 NonAssociatedWithProgression
ENSG00000135144 DTX1 o--b
ENSG00000088986 DYNLL1 --o
ENSG00000111361 EIF2B1 -+o
ENSG00000185684 EP400NL NonAssociatedWithProgression
ENSG00000089248 ERP29 o-o
ENSG00000198324 FAM109A ---
ENSG00000135108 FBXO21 o-+
ENSG00000089154 GCN1L1 o--a
ENSG00000139436 GIT2 NonAssociatedWithProgression
ENSG00000151948 GLT1D1 +o+
ENSG00000139433 GLTP NonAssociatedWithProgression
ENSG00000111358 GTF2H3 NonAssociatedWithProgression
ENSG00000166598 HSP90B1 NonAssociatedWithProgression
ENSG00000122970 IFT81 o+o
ENSG00000110906 KCTD10 NonAssociatedWithProgression
ENSG00000136051 KIAA1033 NonAssociatedWithProgression
ENSG00000184445 KNTC1 o+o
ENSG00000089022 MAPKAPK5 o--a
ENSG00000139428 MMAB NonAssociatedWithProgression
ENSG00000139714 MORN3 NonAssociatedWithProgression
ENSG00000051825 MPHOSPH9 o--b
ENSG00000120832 MTERFD3 NonAssociatedWithProgression
ENSG00000110921 MVK ---
ENSG00000196498 NCOR2 ---
ENSG00000100138 NHP2L1 NonAssociatedWithProgression
ENSG00000123009 NME2P1 NonAssociatedWithProgression
ENSG00000184967 NOC4L o--a
ENSG00000111325 OGFOD2 o--b
ENSG00000135124 P2RX4 --o
ENSG00000089220 PEBP1 NonAssociatedWithProgression
ENSG00000090975 PITPNM2 o-o
ENSG00000177084 POLE o--b
ENSG00000013503 POLR3B -+o
ENSG00000167272 POP5 ---
ENSG00000186298 PPP1CC o--b
ENSG00000111725 PRKAB1 ---
ENSG00000110801 PSMD9 o--b
ENSG00000179295 PTPN11 NonAssociatedWithProgression
ENSG00000177192 PUS1 NonAssociatedWithProgression
ENSG00000111737 RAB35 o--a
ENSG00000132341 RAN o--b
ENSG00000111445 RFC5 -oo
ENSG00000139725 RHOF --o
ENSG00000170633 RNF34 NonAssociatedWithProgression
ENSG00000089157 RPLP0 o--b
ENSG00000075856 SART3 NonAssociatedWithProgression
ENSG00000073060 SCARB1 o--b
ENSG00000110876 SELPLG ---
ENSG00000139718 SETD1B o--b
ENSG00000183955 SETD8 o--b
ENSG00000111252 SH2B3 o-+
ENSG00000139370 SLC15A4 NonAssociatedWithProgression
ENSG00000089060 SLC24A6 o--a
ENSG00000111450 STX2 +-o
ENSG00000111707 SUDS3 o--a
ENSG00000139437 TCHP NonAssociatedWithProgression
ENSG00000139372 TDG NonAssociatedWithProgression
ENSG00000088992 TESC ---
ENSG00000086598 TMED2 +o+
ENSG00000186815 TPCN1 --o
ENSG00000170855 TRIAP1 o--b
ENSG00000151148 UBE3B NonAssociatedWithProgression
ENSG00000177169 ULK1 o--b
ENSG00000175970 UNC119B NonAssociatedWithProgression
ENSG00000111237 VPS29 o+o
ENSG00000139722 VPS37B o--b
ENSG00000176871 WSB2 o++b
ENSG00000033030 ZCCHC8 +oo
ENSG00000196387 ZNF140 NonAssociatedWithProgression
ENSG00000198393 ZNF26 NonAssociatedWithProgression
ENSG00000090612 ZNF268 +oo
ENSG00000196458 ZNF605 NonAssociatedWithProgression
ENSG00000179195 ZNF664 NonAssociatedWithProgression