PEACHi
GeneSet chr12p13 (Chromosomal_Bands.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o-o -2.1 0.0416 43.0 8.0 3.61
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000006831 ADIPOR2 oo-
ENSG00000178878 APOLD1 oo+
ENSG00000171681 ATF7IP ---
ENSG00000171792 C12orf32 NonAssociatedWithProgression
ENSG00000047621 C12orf4 NonAssociatedWithProgression
ENSG00000078237 C12orf5 o++b
ENSG00000111678 C12orf57 NonAssociatedWithProgression
ENSG00000120647 CCDC77 o+o
ENSG00000010278 CD9 o-o
ENSG00000111665 CDCA3 o--a
ENSG00000111276 CDKN1B +o+
ENSG00000111642 CHD4 o--b
ENSG00000110852 CLEC2B NonAssociatedWithProgression
ENSG00000069493 CLEC2D -oo
ENSG00000139182 CLSTN3 NonAssociatedWithProgression
ENSG00000111652 COPS7A o-o
ENSG00000111269 CREBL2 o++b
ENSG00000060138 CSDA -o-
ENSG00000151065 DCP1B o++b
ENSG00000214826 DDX12 o--a
ENSG00000213782 DDX47 o-o
ENSG00000010219 DYRK4 NonAssociatedWithProgression
ENSG00000130038 EFCAB4B +oo
ENSG00000111674 ENO2 o--a
ENSG00000082805 ERC1 o--a
ENSG00000139083 ETV6 o++a
ENSG00000004478 FKBP4 ---
ENSG00000065970 FOXJ2 NonAssociatedWithProgression
ENSG00000111206 FOXM1 o-o
ENSG00000139112 GABARAPL1 o++b
ENSG00000111640 GAPDH o-o
ENSG00000111711 GOLT1B o-o
ENSG00000250510 GPR162 NonAssociatedWithProgression
ENSG00000013583 HEBP1 o-+
ENSG00000111653 ING4 o+-
ENSG00000111203 ITFG2 o--b
ENSG00000151079 KCNA6 NonAssociatedWithProgression
ENSG00000010626 LRRC23 ---
ENSG00000003056 M6PR o-o
ENSG00000111639 MRPL51 NonAssociatedWithProgression
ENSG00000139180 NDUFA9 o--a
ENSG00000089818 NECAP1 NonAssociatedWithProgression
ENSG00000171840 NINJ2 o--b
ENSG00000111224 PARP11 o++b
ENSG00000215021 PHB2 ---
ENSG00000111752 PHC1 -oo
ENSG00000197870 PRB3 o++a
ENSG00000231887 PRH1 o+o
ENSG00000111247 RAD51AP1 NonAssociatedWithProgression
ENSG00000059804 SLC2A3 NonAssociatedWithProgression
ENSG00000111671 SPSB2 ---
ENSG00000023734 STRAP o--b
ENSG00000139192 TAPBPL o+o
ENSG00000067182 TNFRSF1A NonAssociatedWithProgression
ENSG00000111669 TPI1 o-o
ENSG00000078246 TULP3 o--a
ENSG00000111667 USP5 ---
ENSG00000060237 WNK1 NonAssociatedWithProgression