PEACHi
GeneSet chr11q13 (Chromosomal_Bands.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
--- -2.1 0.0424 94.0 19.0 11.5
--o -2.1 0.0412 94.0 7.0 2.88
o--a -2.3 0.03202 94.0 22.0 13.35
DownRegulated -8.1 0.0 94.0 80.0 55.51
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000132744 ACY3 ---
ENSG00000173020 ADRBK1 o--b
ENSG00000110711 AIP o--a
ENSG00000132746 ALDH3B2 NonAssociatedWithProgression
ENSG00000213465 ARL2 o--a
ENSG00000168010 ATG16L2 --o
ENSG00000174684 B3GNT1 o--a
ENSG00000175334 BANF1 o--b
ENSG00000174483 BBS1 ---
ENSG00000174744 BRMS1 o--b
ENSG00000168000 BSCL2 ---
ENSG00000171067 C11orf24 +oo
ENSG00000158636 C11orf30 NonAssociatedWithProgression
ENSG00000110200 C11orf51 o--b
ENSG00000149357 C11orf59 o--a
ENSG00000087884 C11orf67 o--a
ENSG00000175573 C11orf68 o-o
ENSG00000014216 CAPN1 ---
ENSG00000182791 CCDC87 NonAssociatedWithProgression
ENSG00000173992 CCS NonAssociatedWithProgression
ENSG00000174807 CD248 ---
ENSG00000110448 CD5 o--a
ENSG00000167797 CDK2AP2 ---
ENSG00000172757 CFL1 o-o
ENSG00000181924 CHCHD8 NonAssociatedWithProgression
ENSG00000172725 CORO1B o--b
ENSG00000110090 CPT1A --o
ENSG00000174080 CTSF o-+
ENSG00000085733 CTTN o--b
ENSG00000062282 DGAT2 oo+
ENSG00000172893 DHCR7 o--b
ENSG00000133884 DPF2 o-o
ENSG00000175550 DRAP1 o--b
ENSG00000172638 EFEMP2 NonAssociatedWithProgression
ENSG00000110047 EHD1 ---
ENSG00000168040 FADD o--b
ENSG00000149806 FAU o-o
ENSG00000137478 FCHSD2 NonAssociatedWithProgression
ENSG00000172500 FIBP --o
ENSG00000167996 FTH1 oo-
ENSG00000033327 GAB2 +o+
ENSG00000084207 GSTP1 o--a
ENSG00000132740 IGHMBP2 ---
ENSG00000137496 IL18BP o++a
ENSG00000182450 KCNK4 NonAssociatedWithProgression
ENSG00000173621 LRFN4 ---
ENSG00000162337 LRP5 NonAssociatedWithProgression
ENSG00000251562 MALAT1 o++b
ENSG00000173327 MAP3K11 ---
ENSG00000168067 MAP4K2 ---
ENSG00000072518 MARK2 ---
ENSG00000133895 MEN1 ---
ENSG00000174547 MRPL11 ---
ENSG00000197345 MRPL21 NonAssociatedWithProgression
ENSG00000175581 MRPL48 o--a
ENSG00000149792 MRPL49 o-o
ENSG00000172732 MUS81 NonAssociatedWithProgression
ENSG00000172890 NADSYN1 o--a
ENSG00000110717 NDUFS8 o--a
ENSG00000167792 NDUFV1 --o
ENSG00000149761 NUDT22 ---
ENSG00000167799 NUDT8 o--a
ENSG00000137497 NUMA1 o--b
ENSG00000149716 ORAOV1 o--b
ENSG00000167770 OTUB1 --o
ENSG00000175115 PACS1 ---
ENSG00000149269 PAK1 oo+
ENSG00000165494 PCF11 oo-
ENSG00000110697 PITPNM1 ---
ENSG00000014138 POLA2 o++b
ENSG00000175482 POLD4 --o
ENSG00000168002 POLR2G NonAssociatedWithProgression
ENSG00000131626 PPFIA1 NonAssociatedWithProgression
ENSG00000214517 PPME1 o--b
ENSG00000172531 PPP1CA o--a
ENSG00000173457 PPP1R14B o--a
ENSG00000126432 PRDX5 o--a
ENSG00000137492 PRKRIR NonAssociatedWithProgression
ENSG00000213402 PTPRCAP o-o
ENSG00000175582 RAB6A o++b
ENSG00000172613 RAD9A o--b
ENSG00000068831 RASGRP2 o--a
ENSG00000173933 RBM4 o--a
ENSG00000173914 RBM4B NonAssociatedWithProgression
ENSG00000173653 RCE1 o--b
ENSG00000167771 RCOR2 NonAssociatedWithProgression
ENSG00000173039 RELA o--a
ENSG00000172922 RNASEH2C o--b
ENSG00000166439 RNF169 NonAssociatedWithProgression
ENSG00000239559 RPL37P2 o+-
ENSG00000149273 RPS3 o--b
ENSG00000175634 RPS6KB2 -o-
ENSG00000048649 RSF1 +-o
ENSG00000133318 RTN3 o--a
ENSG00000168061 SAC3D1 NonAssociatedWithProgression
ENSG00000149257 SERPINH1 --o
ENSG00000168066 SF1 o-o
ENSG00000087365 SF3B2 NonAssociatedWithProgression
ENSG00000162241 SLC25A45 o-o
ENSG00000174669 SLC29A2 ---
ENSG00000173465 SSSCA1 NonAssociatedWithProgression
ENSG00000214530 STARD10 ---
ENSG00000168439 STIP1 o--b
ENSG00000110066 SUV420H1 o+o
ENSG00000175463 TBC1D10C o-o
ENSG00000149809 TM7SF2 o-o
ENSG00000172663 TMEM134 o--a
ENSG00000149743 TRPT1 NonAssociatedWithProgression
ENSG00000175567 UCP2 o--a
ENSG00000175564 UCP3 NonAssociatedWithProgression
ENSG00000118369 USP35 o+o
ENSG00000198382 UVRAG o++a
ENSG00000173511 VEGFB o--b
ENSG00000166435 XRRA1 NonAssociatedWithProgression
ENSG00000174851 YIF1A o--a
ENSG00000156599 ZDHHC5 o--b
ENSG00000162300 ZFPL1 NonAssociatedWithProgression
ENSG00000174276 ZNHIT2 o--a