PEACHi
GeneSet V$YY1_Q6 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
DownRegulated -4.1 0.01354 101.0 77.0 59.64
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000156110 ADK -+o
ENSG00000065000 AP3D1 o+o
ENSG00000166313 APBB1 o-o
ENSG00000095139 ARCN1 o-o
ENSG00000143761 ARF1 o--b
ENSG00000143437 ARNT o++b
ENSG00000116539 ASH1L o-o
ENSG00000123268 ATF1 o--b
ENSG00000128272 ATF4 o--b
ENSG00000152234 ATP5A1 -o-
ENSG00000116459 ATP5F1 NonAssociatedWithProgression
ENSG00000135390 ATP5G2 oo-
ENSG00000176022 B3GALT6 o-o
ENSG00000095739 BAMBI NonAssociatedWithProgression
ENSG00000119866 BCL11A ---
ENSG00000145741 BTF3 o--b
ENSG00000166167 BTRC --o
ENSG00000165813 C10orf118 o+o
ENSG00000158636 C11orf30 NonAssociatedWithProgression
ENSG00000134779 C18orf10 NonAssociatedWithProgression
ENSG00000125871 C20orf72 NonAssociatedWithProgression
ENSG00000160298 C21orf58 NonAssociatedWithProgression
ENSG00000196642 C9orf86 o--b
ENSG00000108349 CASC3 o-o
ENSG00000108091 CCDC6 o+-
ENSG00000100814 CCNB1IP1 o+-
ENSG00000090061 CCNK +-o
ENSG00000008300 CELSR3 ---
ENSG00000072609 CHFR o-o
ENSG00000141076 CIRH1A NonAssociatedWithProgression
ENSG00000176444 CLK2 NonAssociatedWithProgression
ENSG00000088038 CNOT3 o--a
ENSG00000113742 CPEB4 NonAssociatedWithProgression
ENSG00000113712 CSNK1A1 o+o
ENSG00000132676 DAP3 o--a
ENSG00000174243 DDX23 -o-
ENSG00000110367 DDX6 o--b
ENSG00000070413 DGCR2 o-o
ENSG00000104823 ECH1 o--a
ENSG00000156508 EEF1A1 o--a
ENSG00000161960 EIF4A1 -o-
ENSG00000100664 EIF5 o--b
ENSG00000143420 ENSA oo-
ENSG00000100393 EP300 o++b
ENSG00000120616 EPC1 o--b
ENSG00000181027 FKRP o+o
ENSG00000107862 GBF1 o-o
ENSG00000139436 GIT2 NonAssociatedWithProgression
ENSG00000100226 GTPBP1 o--a
ENSG00000169635 HIC2 o--a
ENSG00000100644 HIF1A NonAssociatedWithProgression
ENSG00000029993 HMGB3 o--b
ENSG00000185122 HSF1 ---
ENSG00000160888 IER2 o--b
ENSG00000184216 IRAK1 o--a
ENSG00000163807 KIAA1143 o--a
ENSG00000072071 LPHN1 ---
ENSG00000011009 LYPLA2 o--a
ENSG00000090316 MAEA o+-
ENSG00000085511 MAP3K4 o--a
ENSG00000186868 MAPT o++a
ENSG00000075413 MARK3 NonAssociatedWithProgression
ENSG00000005483 MLL5 +oo
ENSG00000070444 MNT NonAssociatedWithProgression
ENSG00000123562 MORF4L2 NonAssociatedWithProgression
ENSG00000129255 MPDU1 o--b
ENSG00000085274 MYNN NonAssociatedWithProgression
ENSG00000196531 NACA NonAssociatedWithProgression
ENSG00000132780 NASP o--a
ENSG00000020129 NCDN NonAssociatedWithProgression
ENSG00000141027 NCOR1 NonAssociatedWithProgression
ENSG00000101079 NDRG3 --o
ENSG00000066136 NFYC NonAssociatedWithProgression
ENSG00000144909 OSBPL11 o--b
ENSG00000167081 PBX3 NonAssociatedWithProgression
ENSG00000090097 PCBP4 o-o
ENSG00000070087 PFN2 NonAssociatedWithProgression
ENSG00000108474 PIGL o--b
ENSG00000160783 PMF1 o-o
ENSG00000189266 PNRC2 o+o
ENSG00000181222 POLR2A ---
ENSG00000143190 POU2F1 NonAssociatedWithProgression
ENSG00000077157 PPP1R12B -oo
ENSG00000158615 PPP1R15B +-o
ENSG00000130175 PRKCSH o--b
ENSG00000100804 PSMB5 o--b
ENSG00000011304 PTBP1 ---
ENSG00000187514 PTMA o--b
ENSG00000134644 PUM1 o--a
ENSG00000124209 RAB22A o+-
ENSG00000157869 RAB28 o--b
ENSG00000144566 RAB5A NonAssociatedWithProgression
ENSG00000164754 RAD21 o--b
ENSG00000006451 RALA o-+
ENSG00000102317 RBM3 -o-
ENSG00000122707 RECK NonAssociatedWithProgression
ENSG00000080345 RIF1 NonAssociatedWithProgression
ENSG00000173456 RNF26 o--a
ENSG00000182899 RPL35A NonAssociatedWithProgression
ENSG00000163902 RPN1 o-o
ENSG00000142937 RPS8 NonAssociatedWithProgression
ENSG00000204231 RXRB NonAssociatedWithProgression
ENSG00000099995 SF3A1 o+-
ENSG00000116560 SFPQ +-o
ENSG00000125454 SLC25A19 o--a
ENSG00000225697 SLC26A6 o--a
ENSG00000112473 SLC39A7 o-o
ENSG00000135632 SMYD5 ---
ENSG00000128739 SNRPN o-o
ENSG00000071189 SNX13 NonAssociatedWithProgression
ENSG00000089006 SNX5 oo-
ENSG00000090372 STRN4 o--b
ENSG00000104915 STX10 o--a
ENSG00000132718 SYT11 NonAssociatedWithProgression
ENSG00000106290 TAF6 NonAssociatedWithProgression
ENSG00000120948 TARDBP o--a
ENSG00000213977 TAX1BP3 ---
ENSG00000132405 TBC1D14 o++a
ENSG00000131931 THAP1 NonAssociatedWithProgression
ENSG00000116001 TIA1 -o-
ENSG00000151923 TIAL1 o+o
ENSG00000107854 TNKS2 o-+
ENSG00000177302 TOP3A o--a
ENSG00000164548 TRA2A NonAssociatedWithProgression
ENSG00000165699 TSC1 NonAssociatedWithProgression
ENSG00000160087 UBE2J2 ---
ENSG00000114062 UBE3A NonAssociatedWithProgression
ENSG00000130939 UBE4B o+o
ENSG00000125351 UPF3B NonAssociatedWithProgression
ENSG00000173660 UQCRH NonAssociatedWithProgression
ENSG00000174374 WBSCR16 ---
ENSG00000101940 WDR13 o--b
ENSG00000119333 WDR34 o--b
ENSG00000100811 YY1 o--b
ENSG00000174282 ZBTB4 o-+
ENSG00000156599 ZDHHC5 o--b
ENSG00000005889 ZFX o--b
ENSG00000067646 ZFY NonAssociatedWithProgression
ENSG00000198026 ZNF335 NonAssociatedWithProgression
ENSG00000074755 ZZEF1 ---