PEACHi
GeneSet V$YY1_01 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
oo- -3.4 0.04965 93.0 7.0 1.77
o+- -4.4 0.01708 93.0 11.0 3.01
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000072110 ACTN1 -+o
ENSG00000156110 ADK -+o
ENSG00000101126 ADNP NonAssociatedWithProgression
ENSG00000011243 AKAP8L ---
ENSG00000132466 ANKRD17 ---
ENSG00000166747 AP1G1 o+-
ENSG00000102401 ARMCX3 o++b
ENSG00000116539 ASH1L o-o
ENSG00000135390 ATP5G2 oo-
ENSG00000117410 ATP6V0B o--a
ENSG00000198563 BAT1 o--a
ENSG00000106804 C5 NonAssociatedWithProgression
ENSG00000153113 CAST o+o
ENSG00000141582 CBX4 o+-
ENSG00000198851 CD3E o--a
ENSG00000010610 CD4 o--b
ENSG00000170791 CHCHD7 NonAssociatedWithProgression
ENSG00000173575 CHD2 o--b
ENSG00000188419 CHM o++b
ENSG00000095794 CREM o+o
ENSG00000102974 CTCF o--b
ENSG00000144579 CTDSP1 o--a
ENSG00000154639 CXADR NonAssociatedWithProgression
ENSG00000132676 DAP3 o--a
ENSG00000215301 DDX3X oo-
ENSG00000110367 DDX6 o--b
ENSG00000082458 DLG3 NonAssociatedWithProgression
ENSG00000162616 DNAJB4 o++b
ENSG00000172269 DPAGT1 -+o
ENSG00000125868 DSTN -+o
ENSG00000143507 DUSP10 NonAssociatedWithProgression
ENSG00000164086 DUSP7 o--a
ENSG00000112242 E2F3 NonAssociatedWithProgression
ENSG00000143924 EML4 oo-
ENSG00000120616 EPC1 o--b
ENSG00000185104 FAF1 o--a
ENSG00000143093 FAM40A NonAssociatedWithProgression
ENSG00000072803 FBXW11 o++b
ENSG00000109670 FBXW7 o+-
ENSG00000170345 FOS NonAssociatedWithProgression
ENSG00000089280 FUS o+-
ENSG00000107862 GBF1 o-o
ENSG00000114353 GNAI2 --o
ENSG00000115207 GTF3C2 NonAssociatedWithProgression
ENSG00000169635 HIC2 o--a
ENSG00000164104 HMGB2 o--b
ENSG00000125968 ID1 o--a
ENSG00000111653 ING4 o+-
ENSG00000165458 INPPL1 ---
ENSG00000182149 KIAA0174 o-o
ENSG00000054523 KIF1B o++a
ENSG00000126259 KIRREL2 ---
ENSG00000043462 LCP2 o++b
ENSG00000146963 LUC7L2 o--a
ENSG00000012983 MAP4K5 +o+
ENSG00000015479 MATR3 -o-
ENSG00000005483 MLL5 +oo
ENSG00000020129 NCDN NonAssociatedWithProgression
ENSG00000082641 NFE2L1 NonAssociatedWithProgression
ENSG00000166681 NGFRAP1 NonAssociatedWithProgression
ENSG00000123213 NLN NonAssociatedWithProgression
ENSG00000177463 NR2C2 NonAssociatedWithProgression
ENSG00000213281 NRAS o--b
ENSG00000009694 ODZ1 o+-
ENSG00000112038 OPRM1 ---
ENSG00000007168 PAFAH1B1 o+-
ENSG00000167081 PBX3 NonAssociatedWithProgression
ENSG00000090097 PCBP4 o-o
ENSG00000165494 PCF11 oo-
ENSG00000070087 PFN2 NonAssociatedWithProgression
ENSG00000109118 PHF12 o--a
ENSG00000156531 PHF6 o++a
ENSG00000172943 PHF8 oo+
ENSG00000181690 PLAG1 oo-
ENSG00000164050 PLXNB1 o+-
ENSG00000121577 POPDC2 -+o
ENSG00000221914 PPP2R2A o--b
ENSG00000078304 PPP2R5C NonAssociatedWithProgression
ENSG00000170325 PRDM10 o+o
ENSG00000131791 PRKAB2 NonAssociatedWithProgression
ENSG00000072062 PRKACA ---
ENSG00000181929 PRKAG1 ---
ENSG00000138069 RAB1A o++b
ENSG00000174903 RAB1B o-o
ENSG00000124209 RAB22A o+-
ENSG00000166128 RAB8B o++b
ENSG00000160271 RALGDS o--a
ENSG00000153250 RBMS1 o++b
ENSG00000147274 RBMX oo-
ENSG00000173039 RELA o--a
ENSG00000067560 RHOA o-o
ENSG00000146083 RNF44 NonAssociatedWithProgression
ENSG00000119314 ROD1 o--b
ENSG00000153574 RPIA o--a
ENSG00000101310 SEC23B NonAssociatedWithProgression
ENSG00000197860 SGTB o--b
ENSG00000004864 SLC25A13 NonAssociatedWithProgression
ENSG00000151729 SLC25A4 -oo
ENSG00000071189 SNX13 NonAssociatedWithProgression
ENSG00000187678 SPRY4 +-o
ENSG00000112658 SRF o+-
ENSG00000163486 SRGAP2 NonAssociatedWithProgression
ENSG00000167978 SRRM2 o--a
ENSG00000141298 SSH2 NonAssociatedWithProgression
ENSG00000118007 STAG1 NonAssociatedWithProgression
ENSG00000135316 SYNCRIP o--b
ENSG00000102125 TAZ o-+
ENSG00000145022 TCTA o--a
ENSG00000090447 TFAP4 o--b
ENSG00000140332 TLE3 ---
ENSG00000140416 TPM1 oo+
ENSG00000143549 TPM3 oo-
ENSG00000131323 TRAF3 -+o
ENSG00000114062 UBE3A NonAssociatedWithProgression
ENSG00000130939 UBE4B o+o
ENSG00000119333 WDR34 o--b
ENSG00000108379 WNT3 o+o
ENSG00000146457 WTAP o-o
ENSG00000108953 YWHAE NonAssociatedWithProgression
ENSG00000186660 ZFP91 +-o
ENSG00000036549 ZZZ3 o+-