PEACHi
GeneSet V$USF_C (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
+-o -4.1 0.02246 102.0 11.0 3.19
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000165029 ABCA1 --o
ENSG00000114739 ACVR2B +-o
ENSG00000140470 ADAMTS17 -o-
ENSG00000138031 ADCY3 o-o
ENSG00000101126 ADNP NonAssociatedWithProgression
ENSG00000147853 AK3 o--b
ENSG00000131016 AKAP12 NonAssociatedWithProgression
ENSG00000116337 AMPD2 NonAssociatedWithProgression
ENSG00000197043 ANXA6 o--a
ENSG00000165527 ARF6 NonAssociatedWithProgression
ENSG00000113369 ARRDC3 NonAssociatedWithProgression
ENSG00000141376 BCAS3 -oo
ENSG00000248098 BCKDHA o-o
ENSG00000113916 BCL6 +-o
ENSG00000186174 BCL9L o--b
ENSG00000138756 BMP2K +-o
ENSG00000125378 BMP4 +-o
ENSG00000151893 C10orf46 o--a
ENSG00000197183 C20orf112 o++a
ENSG00000125871 C20orf72 NonAssociatedWithProgression
ENSG00000154642 C21orf91 NonAssociatedWithProgression
ENSG00000136932 C9orf156 NonAssociatedWithProgression
ENSG00000152495 CAMK4 +-o
ENSG00000108091 CCDC6 o+-
ENSG00000079335 CDC14A o+o
ENSG00000143375 CGN ---
ENSG00000171310 CHST11 NonAssociatedWithProgression
ENSG00000114859 CLCN2 ---
ENSG00000080802 CNOT4 ---
ENSG00000174080 CTSF o-+
ENSG00000100197 CYP2D6 ---
ENSG00000071626 DAZAP1 ---
ENSG00000184047 DIABLO o--a
ENSG00000128590 DNAJB9 o--b
ENSG00000119772 DNMT3A o-o
ENSG00000124802 EEF1E1 NonAssociatedWithProgression
ENSG00000123908 EIF2C2 o--b
ENSG00000063046 EIF4B o--a
ENSG00000114867 EIF4G1 ---
ENSG00000132507 EIF5A o--a
ENSG00000126767 ELK1 ---
ENSG00000118402 ELOVL4 +-o
ENSG00000130713 EXOSC2 o--b
ENSG00000077348 EXOSC5 o--a
ENSG00000221968 FADS3 o-+
ENSG00000105202 FBL o-o
ENSG00000137478 FCHSD2 NonAssociatedWithProgression
ENSG00000135723 FHOD1 -+o
ENSG00000134285 FKBP11 --o
ENSG00000141349 G6PC3 o--b
ENSG00000108262 GIT1 -o-
ENSG00000198814 GK -oo
ENSG00000120063 GNA13 NonAssociatedWithProgression
ENSG00000170412 GPRC5C NonAssociatedWithProgression
ENSG00000233276 GPX1 ---
ENSG00000198055 GRK6 ---
ENSG00000110768 GTF2H1 o++b
ENSG00000163041 H3F3A NonAssociatedWithProgression
ENSG00000051108 HERPUD1 +oo
ENSG00000198830 HMGN2 NonAssociatedWithProgression
ENSG00000170606 HSPA4 ---
ENSG00000169087 HSPBAP1 NonAssociatedWithProgression
ENSG00000115541 HSPE1 o+-
ENSG00000120694 HSPH1 o+-
ENSG00000117408 IPO13 NonAssociatedWithProgression
ENSG00000196497 IPO4 o--b
ENSG00000116679 IVNS1ABP NonAssociatedWithProgression
ENSG00000002549 LAP3 -+o
ENSG00000157193 LRP8 o--a
ENSG00000145220 LYAR o--b
ENSG00000168906 MAT2A ---
ENSG00000125952 MAX NonAssociatedWithProgression
ENSG00000125885 MCM8 oo+
ENSG00000133816 MICAL2 o++a
ENSG00000070444 MNT NonAssociatedWithProgression
ENSG00000123562 MORF4L2 NonAssociatedWithProgression
ENSG00000100714 MTHFD1 -+o
ENSG00000123933 MXD4 ---
ENSG00000083168 MYST3 +-o
ENSG00000123213 NLN NonAssociatedWithProgression
ENSG00000181163 NPM1 o--b
ENSG00000090273 NUDC o--a
ENSG00000170515 PA2G4 NonAssociatedWithProgression
ENSG00000070756 PABPC1 o--b
ENSG00000090621 PABPC4 o--a
ENSG00000128050 PAICS NonAssociatedWithProgression
ENSG00000007372 PAX6 NonAssociatedWithProgression
ENSG00000179094 PER1 ---
ENSG00000143256 PFDN2 NonAssociatedWithProgression
ENSG00000108518 PFN1 o-o
ENSG00000143157 POGK o--a
ENSG00000163882 POLR2H o-o
ENSG00000177700 POLR2L o-o
ENSG00000058600 POLR3E NonAssociatedWithProgression
ENSG00000155846 PPARGC1B NonAssociatedWithProgression
ENSG00000128059 PPAT NonAssociatedWithProgression
ENSG00000108819 PPP1R9B -+o
ENSG00000108294 PSMB3 -+o
ENSG00000187514 PTMA o--b
ENSG00000158987 RAPGEF6 NonAssociatedWithProgression
ENSG00000167550 RHEBL1 o--a
ENSG00000143365 RORC o--b
ENSG00000142541 RPL13A NonAssociatedWithProgression
ENSG00000108298 RPL19 o-o
ENSG00000116251 RPL22 +-o
ENSG00000105372 RPS19 -o-
ENSG00000083750 RRAGB o-+
ENSG00000124813 RUNX2 +oo
ENSG00000160753 RUSC1 o-o
ENSG00000204231 RXRB NonAssociatedWithProgression
ENSG00000119042 SATB2 -+o
ENSG00000109929 SC5DL o++b
ENSG00000138623 SEMA7A o--a
ENSG00000119335 SET o--b
ENSG00000197860 SGTB o--b
ENSG00000147010 SH3KBP1 +o+
ENSG00000096717 SIRT1 +-o
ENSG00000144136 SLC20A1 o-o
ENSG00000155850 SLC26A2 +o+
ENSG00000112473 SLC39A7 o-o
ENSG00000072041 SLC6A15 +-o
ENSG00000089006 SNX5 oo-
ENSG00000171150 SOCS5 oo-
ENSG00000174780 SRP72 o--b
ENSG00000117632 STMN1 o--b
ENSG00000172340 SUCLG2 NonAssociatedWithProgression
ENSG00000167074 TEF ---
ENSG00000090447 TFAP4 o--b
ENSG00000177683 THAP5 o+o
ENSG00000151923 TIAL1 o+o
ENSG00000134809 TIMM10 o-o
ENSG00000100575 TIMM9 -+o
ENSG00000146072 TNFRSF21 o--a
ENSG00000128564 VGF NonAssociatedWithProgression
ENSG00000132471 WBP2 NonAssociatedWithProgression
ENSG00000166483 WEE1 NonAssociatedWithProgression
ENSG00000088930 XRN2 NonAssociatedWithProgression
ENSG00000186660 ZFP91 +-o
ENSG00000180233 ZNRF2 o++b