PEACHi
GeneSet V$STAT6_01 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
AllGenesAssociatedWithProgression -3.4 0.03598 96.0 83.0 69.94
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000072110 ACTN1 -+o
ENSG00000121057 AKAP1 o--b
ENSG00000105221 AKT2 o--a
ENSG00000123505 AMD1 o--a
ENSG00000196961 AP2A1 ---
ENSG00000138175 ARL3 -o-
ENSG00000113369 ARRDC3 NonAssociatedWithProgression
ENSG00000174437 ATP2A2 -o-
ENSG00000114439 BBX -+o
ENSG00000119866 BCL11A ---
ENSG00000133639 BTG1 NonAssociatedWithProgression
ENSG00000120685 C13orf23 o--a
ENSG00000133466 C1QTNF6 +o+
ENSG00000116667 C1orf21 o++a
ENSG00000110395 CBL o--b
ENSG00000106554 CHCHD3 o-o
ENSG00000111596 CNOT2 o--b
ENSG00000119723 COQ6 o--a
ENSG00000154639 CXADR NonAssociatedWithProgression
ENSG00000092964 DPYSL2 NonAssociatedWithProgression
ENSG00000100393 EP300 o++b
ENSG00000139083 ETV6 o++a
ENSG00000143093 FAM40A NonAssociatedWithProgression
ENSG00000112146 FBXO9 o++b
ENSG00000109670 FBXW7 o+-
ENSG00000115414 FN1 o++a
ENSG00000137731 FXYD2 o-+
ENSG00000010810 FYN +oo
ENSG00000007237 GAS7 ---
ENSG00000114450 GNB4 -+o
ENSG00000198825 INPP5F NonAssociatedWithProgression
ENSG00000196497 IPO4 o--b
ENSG00000177508 IRX3 oo-
ENSG00000176842 IRX5 o-o
ENSG00000135424 ITGA7 NonAssociatedWithProgression
ENSG00000146021 KLHL3 o++b
ENSG00000143013 LMO4 -+o
ENSG00000110031 LPXN -+o
ENSG00000162337 LRP5 NonAssociatedWithProgression
ENSG00000140400 MAN2C1 ---
ENSG00000034152 MAP2K3 ---
ENSG00000071054 MAP4K4 +-o
ENSG00000112062 MAPK14 o++b
ENSG00000069956 MAPK6 o+-
ENSG00000155130 MARCKS +-o
ENSG00000014641 MDH1 o+o
ENSG00000148187 MRRF o--a
ENSG00000149480 MTA2 ---
ENSG00000102921 N4BP1 o--a
ENSG00000067141 NEO1 o++a
ENSG00000116044 NFE2L2 o--b
ENSG00000100906 NFKBIA o-o
ENSG00000131697 NPHP4 ---
ENSG00000122643 NT5C3 NonAssociatedWithProgression
ENSG00000130669 PAK4 o--b
ENSG00000116005 PCYOX1 o++a
ENSG00000139946 PELI2 +oo
ENSG00000105647 PIK3R2 o--a
ENSG00000137193 PIM1 o--b
ENSG00000107679 PLEKHA1 +o+
ENSG00000100479 POLE2 -o-
ENSG00000138032 PPM1B o-o
ENSG00000129084 PSMA1 o--a
ENSG00000100902 PSMA6 NonAssociatedWithProgression
ENSG00000112655 PTK7 o--a
ENSG00000187514 PTMA o--b
ENSG00000119446 RBM18 -+o
ENSG00000173039 RELA o--a
ENSG00000122481 RWDD3 o++b
ENSG00000182568 SATB1 o--a
ENSG00000106366 SERPINE1 o+-
ENSG00000143368 SF3B4 o--b
ENSG00000156398 SFXN2 o--b
ENSG00000155287 SLC25A28 o--b
ENSG00000146411 SLC2A12 o++a
ENSG00000102100 SLC35A2 o-+
ENSG00000111371 SLC38A1 +-o
ENSG00000134294 SLC38A2 oo-
ENSG00000139514 SLC7A1 +-o
ENSG00000168610 STAT3 o--b
ENSG00000168439 STIP1 o--b
ENSG00000117632 STMN1 o--b
ENSG00000188612 SUMO2 NonAssociatedWithProgression
ENSG00000197321 SVIL o++b
ENSG00000147526 TACC1 o+o
ENSG00000138162 TACC2 o++b
ENSG00000141556 TBCD o--b
ENSG00000151923 TIAL1 o+o
ENSG00000141232 TOB1 NonAssociatedWithProgression
ENSG00000131323 TRAF3 -+o
ENSG00000173334 TRIB1 o--b
ENSG00000109814 UGDH NonAssociatedWithProgression
ENSG00000100749 VRK1 +oo
ENSG00000095787 WAC -o-
ENSG00000116874 WARS2 o-o
ENSG00000162702 ZNF281 o+o