PEACHi
GeneSet V$SRF_Q6 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
-oo -3.7 0.03976 78.0 7.0 1.6
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000097007 ABL1 o--a
ENSG00000159842 ABR oo+
ENSG00000167315 ACAA2 -+o
ENSG00000075624 ACTB o--b
ENSG00000072110 ACTN1 -+o
ENSG00000115091 ACTR3 o+-
ENSG00000162688 AGL -+o
ENSG00000197043 ANXA6 o--a
ENSG00000241553 ARPC4 o--b
ENSG00000128272 ATF4 o--b
ENSG00000135441 BLOC1S1 o--b
ENSG00000168675 C18orf1 o++a
ENSG00000111276 CDKN1B +o+
ENSG00000172757 CFL1 o-o
ENSG00000165410 CFL2 o--a
ENSG00000124177 CHD6 NonAssociatedWithProgression
ENSG00000164442 CITED2 o++b
ENSG00000064666 CNN2 o--b
ENSG00000110880 CORO1C +oo
ENSG00000213923 CSNK1E o--b
ENSG00000144579 CTDSP1 o--a
ENSG00000058866 DGKG NonAssociatedWithProgression
ENSG00000150764 DIXDC1 NonAssociatedWithProgression
ENSG00000104936 DMPK ---
ENSG00000143507 DUSP10 NonAssociatedWithProgression
ENSG00000158050 DUSP2 o--b
ENSG00000138166 DUSP5 +-o
ENSG00000161202 DVL3 o--a
ENSG00000120738 EGR1 NonAssociatedWithProgression
ENSG00000132205 EMILIN2 o-+
ENSG00000143924 EML4 oo-
ENSG00000095203 EPB41L4B -oo
ENSG00000154928 EPHB1 -oo
ENSG00000127418 FGFRL1 NonAssociatedWithProgression
ENSG00000196924 FLNA ---
ENSG00000170345 FOS NonAssociatedWithProgression
ENSG00000125740 FOSB +-o
ENSG00000114861 FOXP1 oo-
ENSG00000138757 G3BP2 NonAssociatedWithProgression
ENSG00000198055 GRK6 ---
ENSG00000188486 H2AFX ---
ENSG00000163041 H3F3A NonAssociatedWithProgression
ENSG00000103657 HERC1 NonAssociatedWithProgression
ENSG00000127124 HIVEP3 +-o
ENSG00000182742 HOXB4 NonAssociatedWithProgression
ENSG00000128714 HOXD13 -oo
ENSG00000135424 ITGA7 NonAssociatedWithProgression
ENSG00000147166 ITGB1BP2 -o-
ENSG00000171223 JUNB ---
ENSG00000054523 KIF1B o++a
ENSG00000163463 KRTCAP2 o-o
ENSG00000134333 LDHA +-o
ENSG00000145012 LPP oo+
ENSG00000162337 LRP5 NonAssociatedWithProgression
ENSG00000166963 MAP1A o--b
ENSG00000162889 MAPKAPK2 o--a
ENSG00000015479 MATR3 -o-
ENSG00000152601 MBNL1 NonAssociatedWithProgression
ENSG00000172732 MUS81 NonAssociatedWithProgression
ENSG00000179820 MYADM oo-
ENSG00000092841 MYL6 o-o
ENSG00000133454 MYO18B -o-
ENSG00000125820 NKX2-2 o-+
ENSG00000163623 NKX6-1 ---
ENSG00000170485 NPAS2 o-+
ENSG00000107833 NPM3 NonAssociatedWithProgression
ENSG00000196923 PDLIM7 -oo
ENSG00000108518 PFN1 o-o
ENSG00000109118 PHF12 o--a
ENSG00000073921 PICALM +o+
ENSG00000162407 PPAP2B NonAssociatedWithProgression
ENSG00000058272 PPP1R12A o+o
ENSG00000131791 PRKAB2 NonAssociatedWithProgression
ENSG00000069974 RAB27A o++b
ENSG00000116473 RAP1A NonAssociatedWithProgression
ENSG00000101265 RASSF2 o++a
ENSG00000102054 RBBP7 o-o
ENSG00000142599 RERE o++b
ENSG00000134318 ROCK2 +o+
ENSG00000167325 RRM1 o--a
ENSG00000148484 RSU1 -oo
ENSG00000198863 RUNDC1 NonAssociatedWithProgression
ENSG00000153130 SCOC NonAssociatedWithProgression
ENSG00000198736 SEPX1 NonAssociatedWithProgression
ENSG00000169375 SIN3A o--b
ENSG00000151729 SLC25A4 -oo
ENSG00000139514 SLC7A1 +-o
ENSG00000112658 SRF o+-
ENSG00000173757 STAT5B ---
ENSG00000104915 STX10 o--a
ENSG00000106868 SUSD1 -o-
ENSG00000197321 SVIL o++b
ENSG00000135316 SYNCRIP o--b
ENSG00000102125 TAZ o-+
ENSG00000140332 TLE3 ---
ENSG00000198467 TPM2 ---
ENSG00000143549 TPM3 oo-
ENSG00000163462 TRIM46 -oo
ENSG00000109332 UBE2D3 NonAssociatedWithProgression
ENSG00000035403 VCL o++a
ENSG00000175213 ZNF408 o--a