PEACHi
GeneSet V$NFMUE1_Q6 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--b -5.0 0.01046 111.0 32.0 15.34
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000113812 ACTR8 o+o
ENSG00000156110 ADK -+o
ENSG00000065000 AP3D1 o+o
ENSG00000166313 APBB1 o-o
ENSG00000113108 APBB3 o--b
ENSG00000095139 ARCN1 o-o
ENSG00000143761 ARF1 o--b
ENSG00000143437 ARNT o++b
ENSG00000116539 ASH1L o-o
ENSG00000123268 ATF1 o--b
ENSG00000128272 ATF4 o--b
ENSG00000116459 ATP5F1 NonAssociatedWithProgression
ENSG00000135390 ATP5G2 oo-
ENSG00000185883 ATP6V0C o--b
ENSG00000127152 BCL11B NonAssociatedWithProgression
ENSG00000029363 BCLAF1 NonAssociatedWithProgression
ENSG00000168283 BMI1 NonAssociatedWithProgression
ENSG00000169925 BRD3 ---
ENSG00000165813 C10orf118 o+o
ENSG00000134779 C18orf10 NonAssociatedWithProgression
ENSG00000160298 C21orf58 NonAssociatedWithProgression
ENSG00000124596 C6orf130 o-o
ENSG00000196642 C9orf86 o--b
ENSG00000094916 CBX5 NonAssociatedWithProgression
ENSG00000060339 CCAR1 o--b
ENSG00000105173 CCNE1 o--b
ENSG00000198851 CD3E o--a
ENSG00000010610 CD4 o--b
ENSG00000173575 CHD2 o--b
ENSG00000013441 CLK1 +oo
ENSG00000171603 CLSTN1 NonAssociatedWithProgression
ENSG00000088038 CNOT3 o--a
ENSG00000113163 COL4A3BP -oo
ENSG00000214078 CPNE1 o--b
ENSG00000165934 CPSF2 NonAssociatedWithProgression
ENSG00000177613 CSTF2T o+-
ENSG00000132676 DAP3 o--a
ENSG00000110367 DDX6 o--b
ENSG00000177030 DEAF1 o-o
ENSG00000070413 DGCR2 o-o
ENSG00000109606 DHX15 +-o
ENSG00000168259 DNAJC7 ---
ENSG00000169016 E2F6 oo-
ENSG00000156508 EEF1A1 o--a
ENSG00000110321 EIF4G2 o+-
ENSG00000100664 EIF5 o--b
ENSG00000143420 ENSA oo-
ENSG00000100393 EP300 o++b
ENSG00000120616 EPC1 o--b
ENSG00000100632 ERH NonAssociatedWithProgression
ENSG00000203667 FAM36A o+o
ENSG00000164896 FASTK o--a
ENSG00000138081 FBXO11 +o+
ENSG00000181027 FKRP o+o
ENSG00000107862 GBF1 o-o
ENSG00000116906 GNPAT NonAssociatedWithProgression
ENSG00000189060 H1F0 o--b
ENSG00000029993 HMGB3 o--b
ENSG00000184216 IRAK1 o--a
ENSG00000111731 KIAA0528 o--b
ENSG00000163807 KIAA1143 o--a
ENSG00000198894 KIAA1737 o--a
ENSG00000090316 MAEA o+-
ENSG00000161021 MAML1 o--b
ENSG00000075413 MARK3 NonAssociatedWithProgression
ENSG00000085274 MYNN NonAssociatedWithProgression
ENSG00000196531 NACA NonAssociatedWithProgression
ENSG00000132780 NASP o--a
ENSG00000020129 NCDN NonAssociatedWithProgression
ENSG00000141027 NCOR1 NonAssociatedWithProgression
ENSG00000166507 NDST2 o-o
ENSG00000183648 NDUFB1 -+o
ENSG00000001167 NFYA NonAssociatedWithProgression
ENSG00000066136 NFYC NonAssociatedWithProgression
ENSG00000168256 NKIRAS2 o--a
ENSG00000165671 NSD1 NonAssociatedWithProgression
ENSG00000136811 ODF2 o--b
ENSG00000100836 PABPN1 o--a
ENSG00000167081 PBX3 NonAssociatedWithProgression
ENSG00000090097 PCBP4 o-o
ENSG00000165494 PCF11 oo-
ENSG00000173889 PHC3 o+o
ENSG00000043143 PHF15 o--b
ENSG00000172943 PHF8 oo+
ENSG00000073921 PICALM +o+
ENSG00000108474 PIGL o--b
ENSG00000197563 PIGN --o
ENSG00000122008 POLK +o+
ENSG00000143190 POU2F1 NonAssociatedWithProgression
ENSG00000186298 PPP1CC o--b
ENSG00000077157 PPP1R12B -oo
ENSG00000158615 PPP1R15B +-o
ENSG00000148840 PPRC1 o--b
ENSG00000130175 PRKCSH o--b
ENSG00000147224 PRPS1 o--a
ENSG00000161542 PRPSAP1 o++a
ENSG00000100804 PSMB5 o--b
ENSG00000099341 PSMD8 o--b
ENSG00000117569 PTBP2 +oo
ENSG00000138069 RAB1A o++b
ENSG00000124209 RAB22A o+-
ENSG00000136238 RAC1 NonAssociatedWithProgression
ENSG00000179262 RAD23A NonAssociatedWithProgression
ENSG00000006451 RALA o-+
ENSG00000244462 RBM12 o--b
ENSG00000102317 RBM3 -o-
ENSG00000173933 RBM4 o--a
ENSG00000003756 RBM5 o-o
ENSG00000084093 REST NonAssociatedWithProgression
ENSG00000080298 RFX3 NonAssociatedWithProgression
ENSG00000080345 RIF1 NonAssociatedWithProgression
ENSG00000101782 RIOK3 o--a
ENSG00000173456 RNF26 o--a
ENSG00000117748 RPA2 oo-
ENSG00000156482 RPL30 o++b
ENSG00000182899 RPL35A NonAssociatedWithProgression
ENSG00000177954 RPS27 o-o
ENSG00000168066 SF1 o-o
ENSG00000116560 SFPQ +-o
ENSG00000176087 SLC35A4 NonAssociatedWithProgression
ENSG00000029364 SLC39A9 NonAssociatedWithProgression
ENSG00000135632 SMYD5 ---
ENSG00000071189 SNX13 NonAssociatedWithProgression
ENSG00000133226 SRRM1 o--b
ENSG00000118007 STAG1 NonAssociatedWithProgression
ENSG00000090372 STRN4 o--b
ENSG00000131931 THAP1 NonAssociatedWithProgression
ENSG00000116001 TIA1 -o-
ENSG00000107854 TNKS2 o-+
ENSG00000177302 TOP3A o--a
ENSG00000165699 TSC1 NonAssociatedWithProgression
ENSG00000109332 UBE2D3 NonAssociatedWithProgression
ENSG00000160087 UBE2J2 ---
ENSG00000130939 UBE4B o+o
ENSG00000173660 UQCRH NonAssociatedWithProgression
ENSG00000090686 USP48 o+-
ENSG00000220205 VAMP2 o--b
ENSG00000165637 VDAC2 -o-
ENSG00000106299 WASL o+o
ENSG00000174374 WBSCR16 ---
ENSG00000136709 WDR33 +o+
ENSG00000143324 XPR1 -+o
ENSG00000100811 YY1 o--b
ENSG00000186660 ZFP91 +-o
ENSG00000005889 ZFX o--b
ENSG00000067646 ZFY NonAssociatedWithProgression
ENSG00000010244 ZNF207 NonAssociatedWithProgression
ENSG00000074755 ZZEF1 ---