PEACHi
GeneSet V$MYCMAX_B (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
DownRegulated -4.3 0.01005 87.0 68.0 51.38
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000164163 ABCE1 NonAssociatedWithProgression
ENSG00000166016 ABTB2 NonAssociatedWithProgression
ENSG00000243989 ACY1 ---
ENSG00000147853 AK3 o--b
ENSG00000164162 ANAPC10 o++b
ENSG00000106524 ANKMY2 o-+
ENSG00000165527 ARF6 NonAssociatedWithProgression
ENSG00000138175 ARL3 -o-
ENSG00000163930 BAP1 o--b
ENSG00000248098 BCKDHA o-o
ENSG00000127152 BCL11B NonAssociatedWithProgression
ENSG00000136261 BZW2 NonAssociatedWithProgression
ENSG00000119669 C14orf4 NonAssociatedWithProgression
ENSG00000116667 C1orf21 o++a
ENSG00000125871 C20orf72 NonAssociatedWithProgression
ENSG00000143933 CALM2 o--a
ENSG00000160014 CALM3 o--a
ENSG00000150753 CCT5 o--a
ENSG00000167193 CRK o+o
ENSG00000100197 CYP2D6 ---
ENSG00000071626 DAZAP1 ---
ENSG00000105516 DBP ---
ENSG00000131504 DIAPH1 o--b
ENSG00000080845 DLGAP4 NonAssociatedWithProgression
ENSG00000007923 DNAJC11 o--a
ENSG00000147654 EBAG9 NonAssociatedWithProgression
ENSG00000114942 EEF1B2 -o-
ENSG00000132507 EIF5A o--a
ENSG00000151491 EPS8 o++a
ENSG00000120705 ETF1 o--a
ENSG00000182944 EWSR1 o--b
ENSG00000077348 EXOSC5 o--a
ENSG00000137478 FCHSD2 NonAssociatedWithProgression
ENSG00000141349 G6PC3 o--b
ENSG00000162676 GFI1 o-o
ENSG00000108262 GIT1 -o-
ENSG00000184897 H1FX o--a
ENSG00000137309 HMGA1 o--b
ENSG00000189159 HN1 o-+
ENSG00000152795 HNRPDL oo-
ENSG00000125430 HS3ST3B1 +o+
ENSG00000125968 ID1 o--a
ENSG00000129351 ILF3 -o-
ENSG00000205339 IPO7 NonAssociatedWithProgression
ENSG00000116679 IVNS1ABP NonAssociatedWithProgression
ENSG00000129474 JUB +o+
ENSG00000055118 KCNH2 -oo
ENSG00000169926 KLF13 oo-
ENSG00000108424 KPNB1 o--a
ENSG00000157193 LRP8 o--a
ENSG00000133816 MICAL2 o++a
ENSG00000115053 NCL o--b
ENSG00000023228 NDUFS1 o+o
ENSG00000181163 NPM1 o--b
ENSG00000073969 NSF o++a
ENSG00000102898 NUTF2 --o
ENSG00000070756 PABPC1 o--b
ENSG00000120727 PAIP2 NonAssociatedWithProgression
ENSG00000090097 PCBP4 o-o
ENSG00000179094 PER1 ---
ENSG00000100029 PES1 o--b
ENSG00000108518 PFN1 o-o
ENSG00000164040 PGRMC2 o--a
ENSG00000010318 PHF7 NonAssociatedWithProgression
ENSG00000073921 PICALM +o+
ENSG00000155846 PPARGC1B NonAssociatedWithProgression
ENSG00000108819 PPP1R9B -+o
ENSG00000112655 PTK7 o--a
ENSG00000187514 PTMA o--b
ENSG00000104960 PTOV1 o-o
ENSG00000099901 RANBP1 NonAssociatedWithProgression
ENSG00000158987 RAPGEF6 NonAssociatedWithProgression
ENSG00000102054 RBBP7 o-o
ENSG00000120158 RCL1 NonAssociatedWithProgression
ENSG00000101695 RNF125 o-+
ENSG00000118518 RNF146 o++b
ENSG00000143365 RORC o--b
ENSG00000105372 RPS19 -o-
ENSG00000177189 RPS6KA3 NonAssociatedWithProgression
ENSG00000102098 SCML2 NonAssociatedWithProgression
ENSG00000117118 SDHB NonAssociatedWithProgression
ENSG00000058262 SEC61A1 ---
ENSG00000138623 SEMA7A o--a
ENSG00000132386 SERPINF1 ---
ENSG00000177045 SIX5 NonAssociatedWithProgression
ENSG00000005022 SLC25A5 NonAssociatedWithProgression
ENSG00000089006 SNX5 oo-
ENSG00000124766 SOX4 +oo
ENSG00000008294 SPAG9 oo-
ENSG00000090487 SPG21 --o
ENSG00000121067 SPOP o--b
ENSG00000112658 SRF o+-
ENSG00000101972 STAG2 o--b
ENSG00000117632 STMN1 o--b
ENSG00000064995 TAF11 o--b
ENSG00000070814 TCOF1 o--b
ENSG00000087510 TFAP2C o--a
ENSG00000090447 TFAP4 o--b
ENSG00000118707 TGIF2 ---
ENSG00000105576 TNPO2 o--a
ENSG00000173334 TRIB1 o--b
ENSG00000100991 TRPC4AP +-o
ENSG00000109332 UBE2D3 NonAssociatedWithProgression
ENSG00000108106 UBE2S o--a
ENSG00000101558 VAPA NonAssociatedWithProgression
ENSG00000166483 WEE1 NonAssociatedWithProgression
ENSG00000088930 XRN2 NonAssociatedWithProgression
ENSG00000015532 XYLT2 --o
ENSG00000198492 YTHDF2 o--a
ENSG00000175048 ZDHHC14 ---
ENSG00000156599 ZDHHC5 o--b
ENSG00000184517 ZFP1 NonAssociatedWithProgression
ENSG00000185650 ZFP36L1 o-o
ENSG00000165244 ZNF367 NonAssociatedWithProgression
ENSG00000105732 ZNF574 ---
ENSG00000180233 ZNRF2 o++b