PEACHi
GeneSet V$MYCMAX_01 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--b -4.8 0.0115 90.0 27.0 12.43
DownRegulated -5.2 0.00195 90.0 72.0 53.15
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000165029 ABCA1 --o
ENSG00000243989 ACY1 ---
ENSG00000140470 ADAMTS17 -o-
ENSG00000116337 AMPD2 NonAssociatedWithProgression
ENSG00000138175 ARL3 -o-
ENSG00000171456 ASXL1 o--b
ENSG00000197785 ATAD3A o--a
ENSG00000160072 ATAD3B o--a
ENSG00000171681 ATF7IP ---
ENSG00000141376 BCAS3 -oo
ENSG00000099385 BCL7C ---
ENSG00000125378 BMP4 +-o
ENSG00000197183 C20orf112 o++a
ENSG00000125871 C20orf72 NonAssociatedWithProgression
ENSG00000084774 CAD o--a
ENSG00000094916 CBX5 NonAssociatedWithProgression
ENSG00000079335 CDC14A o+o
ENSG00000111642 CHD4 o--b
ENSG00000188603 CLN3 o++b
ENSG00000103653 CSK o--b
ENSG00000100197 CYP2D6 ---
ENSG00000071626 DAZAP1 ---
ENSG00000184047 DIABLO o--a
ENSG00000131504 DIAPH1 o--b
ENSG00000114942 EEF1B2 -o-
ENSG00000123908 EIF2C2 o--b
ENSG00000159023 EPB41 -o-
ENSG00000173153 ESRRA ---
ENSG00000182944 EWSR1 o--b
ENSG00000134285 FKBP11 --o
ENSG00000198815 FOXJ3 NonAssociatedWithProgression
ENSG00000141349 G6PC3 o--b
ENSG00000108262 GIT1 -o-
ENSG00000170412 GPRC5C NonAssociatedWithProgression
ENSG00000169727 GPS1 ---
ENSG00000163041 H3F3A NonAssociatedWithProgression
ENSG00000100084 HIRA ---
ENSG00000137309 HMGA1 o--b
ENSG00000152795 HNRPDL oo-
ENSG00000120087 HOXB7 +o+
ENSG00000169087 HSPBAP1 NonAssociatedWithProgression
ENSG00000214706 IFRD2 ---
ENSG00000129351 ILF3 -o-
ENSG00000117408 IPO13 NonAssociatedWithProgression
ENSG00000205339 IPO7 NonAssociatedWithProgression
ENSG00000116679 IVNS1ABP NonAssociatedWithProgression
ENSG00000185760 KCNQ5 o++a
ENSG00000100578 KIAA0586 o--b
ENSG00000132361 KIAA0664 ---
ENSG00000163463 KRTCAP2 o-o
ENSG00000002549 LAP3 -+o
ENSG00000157193 LRP8 o--a
ENSG00000145220 LYAR o--b
ENSG00000168906 MAT2A ---
ENSG00000118058 MLL o--a
ENSG00000070444 MNT NonAssociatedWithProgression
ENSG00000185608 MRPL40 NonAssociatedWithProgression
ENSG00000100714 MTHFD1 -+o
ENSG00000123933 MXD4 ---
ENSG00000115053 NCL o--b
ENSG00000023228 NDUFS1 o+o
ENSG00000181163 NPM1 o--b
ENSG00000213281 NRAS o--b
ENSG00000090273 NUDC o--a
ENSG00000115758 ODC1 o--b
ENSG00000170515 PA2G4 NonAssociatedWithProgression
ENSG00000070756 PABPC1 o--b
ENSG00000128050 PAICS NonAssociatedWithProgression
ENSG00000179094 PER1 ---
ENSG00000108518 PFN1 o-o
ENSG00000143157 POGK o--a
ENSG00000155846 PPARGC1B NonAssociatedWithProgression
ENSG00000128059 PPAT NonAssociatedWithProgression
ENSG00000108819 PPP1R9B -+o
ENSG00000148840 PPRC1 o--b
ENSG00000123131 PRDX4 o--a
ENSG00000147224 PRPS1 o--a
ENSG00000131467 PSME3 o-o
ENSG00000148334 PTGES2 NonAssociatedWithProgression
ENSG00000187514 PTMA o--b
ENSG00000177192 PUS1 NonAssociatedWithProgression
ENSG00000213339 QTRT1 o--a
ENSG00000151576 QTRTD1 NonAssociatedWithProgression
ENSG00000099901 RANBP1 NonAssociatedWithProgression
ENSG00000120158 RCL1 NonAssociatedWithProgression
ENSG00000167771 RCOR2 NonAssociatedWithProgression
ENSG00000143390 RFX5 NonAssociatedWithProgression
ENSG00000167550 RHEBL1 o--a
ENSG00000143365 RORC o--b
ENSG00000105372 RPS19 -o-
ENSG00000100784 RPS6KA5 NonAssociatedWithProgression
ENSG00000124813 RUNX2 +oo
ENSG00000119042 SATB2 -+o
ENSG00000156398 SFXN2 o--b
ENSG00000149150 SLC43A1 o--b
ENSG00000072041 SLC6A15 +-o
ENSG00000175387 SMAD2 NonAssociatedWithProgression
ENSG00000089006 SNX5 oo-
ENSG00000174780 SRP72 o--b
ENSG00000117632 STMN1 o--b
ENSG00000076944 STXBP2 o--b
ENSG00000172340 SUCLG2 NonAssociatedWithProgression
ENSG00000135316 SYNCRIP o--b
ENSG00000113649 TCERG1 o--a
ENSG00000070814 TCOF1 o--b
ENSG00000070759 TESK2 +o+
ENSG00000090447 TFAP4 o--b
ENSG00000072274 TFRC o++a
ENSG00000134809 TIMM10 o-o
ENSG00000126953 TIMM8A NonAssociatedWithProgression
ENSG00000100575 TIMM9 -+o
ENSG00000198900 TOP1 o+o
ENSG00000173334 TRIB1 o--b
ENSG00000163462 TRIM46 -oo
ENSG00000063244 U2AF2 ---
ENSG00000119048 UBE2B o+-
ENSG00000135655 USP15 NonAssociatedWithProgression
ENSG00000115464 USP34 -o-
ENSG00000205189 ZBTB10 NonAssociatedWithProgression
ENSG00000178764 ZHX2 NonAssociatedWithProgression