PEACHi
GeneSet V$LFA1_Q6 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
DownRegulated -3.7 0.02364 66.0 52.0 38.98
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000148926 ADM +oo
ENSG00000117020 AKT3 o++b
ENSG00000196975 ANXA4 NonAssociatedWithProgression
ENSG00000117713 ARID1A o--b
ENSG00000032219 ARID4A o-+
ENSG00000171456 ASXL1 o--b
ENSG00000127152 BCL11B NonAssociatedWithProgression
ENSG00000113916 BCL6 +-o
ENSG00000156983 BRPF1 o--b
ENSG00000129480 C14orf126 o++a
ENSG00000182087 C19orf6 o--b
ENSG00000067191 CACNB1 ---
ENSG00000163660 CCNL1 NonAssociatedWithProgression
ENSG00000172216 CEBPB +-o
ENSG00000079432 CIC NonAssociatedWithProgression
ENSG00000166165 CKB o-o
ENSG00000141367 CLTC -o-
ENSG00000149970 CNKSR2 -oo
ENSG00000064666 CNN2 o--b
ENSG00000115944 COX7A2L ---
ENSG00000214078 CPNE1 o--b
ENSG00000121966 CXCR4 o--b
ENSG00000204843 DCTN1 ---
ENSG00000100201 DDX17 NonAssociatedWithProgression
ENSG00000080845 DLGAP4 NonAssociatedWithProgression
ENSG00000104936 DMPK ---
ENSG00000133884 DPF2 o-o
ENSG00000143590 EFNA3 ---
ENSG00000182511 FES NonAssociatedWithProgression
ENSG00000128683 GAD1 -+o
ENSG00000070610 GBA2 o+o
ENSG00000181773 GPR3 ---
ENSG00000082701 GSK3B -o-
ENSG00000100983 GSS NonAssociatedWithProgression
ENSG00000112855 HARS2 NonAssociatedWithProgression
ENSG00000013583 HEBP1 o-+
ENSG00000114315 HES1 NonAssociatedWithProgression
ENSG00000100084 HIRA ---
ENSG00000214706 IFRD2 ---
ENSG00000132305 IMMT NonAssociatedWithProgression
ENSG00000132361 KIAA0664 ---
ENSG00000121210 KIAA0922 o-o
ENSG00000129250 KIF1C +o+
ENSG00000213398 LCAT ---
ENSG00000157193 LRP8 o--a
ENSG00000003056 M6PR o-o
ENSG00000103495 MAZ o--a
ENSG00000187778 MCRS1 o--b
ENSG00000198408 MGEA5 o++b
ENSG00000070444 MNT NonAssociatedWithProgression
ENSG00000155363 MOV10 ---
ENSG00000185608 MRPL40 NonAssociatedWithProgression
ENSG00000196531 NACA NonAssociatedWithProgression
ENSG00000020129 NCDN NonAssociatedWithProgression
ENSG00000158864 NDUFS2 --o
ENSG00000102908 NFAT5 o--b
ENSG00000100906 NFKBIA o-o
ENSG00000119655 NPC2 NonAssociatedWithProgression
ENSG00000154146 NRGN --o
ENSG00000162231 NXF1 o--a
ENSG00000111845 PAK1IP1 NonAssociatedWithProgression
ENSG00000197111 PCBP2 o--a
ENSG00000196923 PDLIM7 -oo
ENSG00000109118 PHF12 o--a
ENSG00000175482 POLD4 --o
ENSG00000152192 POU4F1 oo+
ENSG00000170325 PRDM10 o+o
ENSG00000163348 PYGO2 ---
ENSG00000174903 RAB1B o-o
ENSG00000167578 RAB4B ---
ENSG00000108774 RAB5C NonAssociatedWithProgression
ENSG00000100949 RABGGTA ---
ENSG00000068831 RASGRP2 o--a
ENSG00000122257 RBBP6 ---
ENSG00000244462 RBM12 o--b
ENSG00000177105 RHOG o--a
ENSG00000196420 S100A5 NonAssociatedWithProgression
ENSG00000100092 SH3BP1 --o
ENSG00000166949 SMAD3 NonAssociatedWithProgression
ENSG00000108604 SMARCD2 o--b
ENSG00000165283 STOML2 ---
ENSG00000081059 TCF7 o+-
ENSG00000186815 TPCN1 --o
ENSG00000125733 TRIP10 NonAssociatedWithProgression
ENSG00000122042 UBL3 NonAssociatedWithProgression
ENSG00000151461 UPF2 NonAssociatedWithProgression
ENSG00000010256 UQCRC1 o--a
ENSG00000128016 ZFP36 o--b
ENSG00000179588 ZFPM1 ---