PEACHi
GeneSet V$LBP1_Q6 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
AllGenesAssociatedWithProgression -3.9 0.01343 69.0 62.0 50.27
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000150967 ABCB9 o--a
ENSG00000117713 ARID1A o--b
ENSG00000171681 ATF7IP ---
ENSG00000076108 BAZ2A o++b
ENSG00000110987 BCL7A -o-
ENSG00000186174 BCL9L o--b
ENSG00000168000 BSCL2 ---
ENSG00000166272 C10orf26 ---
ENSG00000148660 CAMK2G o+o
ENSG00000111276 CDKN1B +o+
ENSG00000123080 CDKN2C o-o
ENSG00000111642 CHD4 o--b
ENSG00000100592 DAAM1 o++b
ENSG00000198924 DCLRE1A o-o
ENSG00000168209 DDIT4 o+-
ENSG00000088387 DOCK9 o++a
ENSG00000169242 EFNA1 oo+
ENSG00000110321 EIF4G2 o+-
ENSG00000109911 ELP4 NonAssociatedWithProgression
ENSG00000000938 FGR o--b
ENSG00000033327 GAB2 +o+
ENSG00000107485 GATA3 o+o
ENSG00000162676 GFI1 o-o
ENSG00000198873 GRK5 +oo
ENSG00000127124 HIVEP3 +-o
ENSG00000149948 HMGA2 oo-
ENSG00000198830 HMGN2 NonAssociatedWithProgression
ENSG00000171988 JMJD1C +oo
ENSG00000054523 KIF1B o++a
ENSG00000163463 KRTCAP2 o-o
ENSG00000182866 LCK o-o
ENSG00000110811 LEPREL2 ---
ENSG00000143013 LMO4 -+o
ENSG00000139793 MBNL2 NonAssociatedWithProgression
ENSG00000076706 MCAM o-o
ENSG00000116604 MEF2D o--b
ENSG00000118058 MLL o--a
ENSG00000214114 MYCBP -oo
ENSG00000172915 NBEA -+o
ENSG00000196865 NHLRC2 NonAssociatedWithProgression
ENSG00000182379 NXPH4 NonAssociatedWithProgression
ENSG00000135124 P2RX4 --o
ENSG00000165494 PCF11 oo-
ENSG00000073921 PICALM +o+
ENSG00000175482 POLD4 --o
ENSG00000100614 PPM1A o--a
ENSG00000107758 PPP3CB o+-
ENSG00000111540 RAB5B o--b
ENSG00000173039 RELA o--a
ENSG00000143365 RORC o--b
ENSG00000020633 RUNX3 o--b
ENSG00000092108 SCFD1 o-o
ENSG00000110876 SELPLG ---
ENSG00000142669 SH3BGRL3 o--b
ENSG00000092096 SLC22A17 ---
ENSG00000117155 SSX2IP -o-
ENSG00000092201 SUPT16H o--a
ENSG00000197321 SVIL o++b
ENSG00000149582 TMEM25 -+o
ENSG00000186815 TPCN1 --o
ENSG00000163462 TRIM46 -oo
ENSG00000043514 TRIT1 o+-
ENSG00000139190 VAMP1 o++b
ENSG00000049245 VAMP3 NonAssociatedWithProgression
ENSG00000143324 XPR1 -+o
ENSG00000198492 YTHDF2 o--a
ENSG00000179456 ZNF238 o-o
ENSG00000165655 ZNF503 -+o
ENSG00000019995 ZRANB1 NonAssociatedWithProgression