PEACHi
GeneSet V$E2F1_Q6_01 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--b -4.3 0.01708 95.0 27.0 13.12
DownRegulated -4.1 0.01354 95.0 73.0 56.1
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000100412 ACO2 -oo
ENSG00000004455 AK2 o--a
ENSG00000123505 AMD1 o--a
ENSG00000131503 ANKHD1 o--b
ENSG00000106367 AP1S1 ---
ENSG00000221838 AP4M1 NonAssociatedWithProgression
ENSG00000198826 ARHGAP11A oo-
ENSG00000143970 ASXL2 o--b
ENSG00000156802 ATAD2 NonAssociatedWithProgression
ENSG00000107669 ATE1 -+o
ENSG00000149311 ATM NonAssociatedWithProgression
ENSG00000135390 ATP5G2 oo-
ENSG00000100916 BRMS1L o--b
ENSG00000197771 C10orf119 o+-
ENSG00000170270 C14orf142 NonAssociatedWithProgression
ENSG00000106144 CASP2 o--a
ENSG00000094916 CBX5 NonAssociatedWithProgression
ENSG00000164045 CDC25A o--b
ENSG00000096401 CDC5L NonAssociatedWithProgression
ENSG00000144354 CDCA7 NonAssociatedWithProgression
ENSG00000111642 CHD4 o--b
ENSG00000088038 CNOT3 o--a
ENSG00000102974 CTCF o--b
ENSG00000134574 DDB2 o--a
ENSG00000100201 DDX17 NonAssociatedWithProgression
ENSG00000176124 DLEU1 -o-
ENSG00000231607 DLEU2 oo-
ENSG00000007923 DNAJC11 o--a
ENSG00000213551 DNAJC9 NonAssociatedWithProgression
ENSG00000130816 DNMT1 o-o
ENSG00000101412 E2F1 o--b
ENSG00000112242 E2F3 NonAssociatedWithProgression
ENSG00000074266 EED o--a
ENSG00000173674 EIF1AX ---
ENSG00000178982 EIF3K o+o
ENSG00000112851 ERBB2IP NonAssociatedWithProgression
ENSG00000105722 ERF ---
ENSG00000135476 ESPL1 o-+
ENSG00000106462 EZH2 NonAssociatedWithProgression
ENSG00000185104 FAF1 o--a
ENSG00000158169 FANCC o-o
ENSG00000112029 FBXO5 NonAssociatedWithProgression
ENSG00000135723 FHOD1 -+o
ENSG00000096060 FKBP5 o--b
ENSG00000157240 FZD1 -oo
ENSG00000099860 GADD45B o--b
ENSG00000112312 GMNN NonAssociatedWithProgression
ENSG00000168243 GNG4 o--a
ENSG00000103342 GSPT1 NonAssociatedWithProgression
ENSG00000100084 HIRA ---
ENSG00000149948 HMGA2 oo-
ENSG00000198830 HMGN2 NonAssociatedWithProgression
ENSG00000117318 ID3 ---
ENSG00000129351 ILF3 -o-
ENSG00000205339 IPO7 NonAssociatedWithProgression
ENSG00000177508 IRX3 oo-
ENSG00000104369 JPH1 NonAssociatedWithProgression
ENSG00000165572 KBTBD6 o-+
ENSG00000120696 KBTBD7 NonAssociatedWithProgression
ENSG00000102554 KLF5 o-+
ENSG00000123384 LRP1 NonAssociatedWithProgression
ENSG00000104814 MAP4K1 NonAssociatedWithProgression
ENSG00000103495 MAZ o--a
ENSG00000073111 MCM2 o--a
ENSG00000104738 MCM4 o--a
ENSG00000076003 MCM6 o--a
ENSG00000166508 MCM7 o--b
ENSG00000125885 MCM8 oo+
ENSG00000134138 MEIS2 o++b
ENSG00000168282 MGAT2 o--b
ENSG00000185608 MRPL40 NonAssociatedWithProgression
ENSG00000095002 MSH2 +oo
ENSG00000213347 MXD3 o--a
ENSG00000136997 MYC o--b
ENSG00000133026 MYH10 o--a
ENSG00000132780 NASP o--a
ENSG00000136937 NCBP1 o+-
ENSG00000115053 NCL o--b
ENSG00000198646 NCOA6 o--b
ENSG00000166197 NOLC1 o--b
ENSG00000149308 NPAT o-+
ENSG00000137497 NUMA1 o--b
ENSG00000162073 PAQR4 NonAssociatedWithProgression
ENSG00000007372 PAX6 NonAssociatedWithProgression
ENSG00000132646 PCNA -o-
ENSG00000116273 PHF13 NonAssociatedWithProgression
ENSG00000043143 PHF15 o--b
ENSG00000100410 PHF5A o--b
ENSG00000171608 PIK3CD o++a
ENSG00000127564 PKMYT1 +-o
ENSG00000014138 POLA2 o++b
ENSG00000077514 POLD3 o+o
ENSG00000100479 POLE2 -o-
ENSG00000143190 POU2F1 NonAssociatedWithProgression
ENSG00000117751 PPP1R8 NonAssociatedWithProgression
ENSG00000148840 PPRC1 o--b
ENSG00000253729 PRKDC o--b
ENSG00000147224 PRPS1 o--a
ENSG00000187514 PTMA o--b
ENSG00000185236 RAB11B ---
ENSG00000051180 RAD51 NonAssociatedWithProgression
ENSG00000099901 RANBP1 NonAssociatedWithProgression
ENSG00000161847 RAVER1 ---
ENSG00000023287 RB1CC1 o+o
ENSG00000080839 RBL1 +o+
ENSG00000105372 RPS19 -o-
ENSG00000144580 RQCD1 NonAssociatedWithProgression
ENSG00000170145 SIK2 o--a
ENSG00000169375 SIN3A o--b
ENSG00000065923 SLC9A7 -+o
ENSG00000185591 SP1 o--a
ENSG00000063176 SPHK2 o-o
ENSG00000118007 STAG1 NonAssociatedWithProgression
ENSG00000101972 STAG2 o--b
ENSG00000125834 STK35 ---
ENSG00000117632 STMN1 o--b
ENSG00000116030 SUMO1 NonAssociatedWithProgression
ENSG00000101945 SUV39H1 o--a
ENSG00000135316 SYNCRIP o--b
ENSG00000090447 TFAP4 o--b
ENSG00000120802 TMPO -o-
ENSG00000163781 TOPBP1 o+o
ENSG00000204599 TRIM39 oo-
ENSG00000092445 TYRO3 o-+
ENSG00000070010 UFD1L o+-
ENSG00000166483 WEE1 NonAssociatedWithProgression
ENSG00000147548 WHSC1L1 o--b
ENSG00000078487 ZCWPW1 -oo
ENSG00000165244 ZNF367 NonAssociatedWithProgression