PEACHi
GeneSet V$E2F1_Q6 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
DownRegulated -3.4 0.03183 83.0 63.0 49.01
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000100412 ACO2 -oo
ENSG00000004455 AK2 o--a
ENSG00000106367 AP1S1 ---
ENSG00000221838 AP4M1 NonAssociatedWithProgression
ENSG00000198826 ARHGAP11A oo-
ENSG00000032219 ARID4A o-+
ENSG00000143970 ASXL2 o--b
ENSG00000156802 ATAD2 NonAssociatedWithProgression
ENSG00000107669 ATE1 -+o
ENSG00000169136 ATF5 ---
ENSG00000100916 BRMS1L o--b
ENSG00000197771 C10orf119 o+-
ENSG00000158636 C11orf30 NonAssociatedWithProgression
ENSG00000170270 C14orf142 NonAssociatedWithProgression
ENSG00000122565 CBX3 o--a
ENSG00000164045 CDC25A o--b
ENSG00000096401 CDC5L NonAssociatedWithProgression
ENSG00000094804 CDC6 NonAssociatedWithProgression
ENSG00000144354 CDCA7 NonAssociatedWithProgression
ENSG00000241563 CORT NonAssociatedWithProgression
ENSG00000102974 CTCF o--b
ENSG00000156136 DCK ---
ENSG00000213551 DNAJC9 NonAssociatedWithProgression
ENSG00000130816 DNMT1 o-o
ENSG00000101412 E2F1 o--b
ENSG00000112242 E2F3 NonAssociatedWithProgression
ENSG00000165891 E2F7 NonAssociatedWithProgression
ENSG00000074266 EED o--a
ENSG00000154928 EPHB1 -oo
ENSG00000112851 ERBB2IP NonAssociatedWithProgression
ENSG00000106462 EZH2 NonAssociatedWithProgression
ENSG00000158169 FANCC o-o
ENSG00000144554 FANCD2 oo+
ENSG00000112029 FBXO5 NonAssociatedWithProgression
ENSG00000135723 FHOD1 -+o
ENSG00000096060 FKBP5 o--b
ENSG00000076258 FMO4 o++a
ENSG00000112312 GMNN NonAssociatedWithProgression
ENSG00000103342 GSPT1 NonAssociatedWithProgression
ENSG00000105968 H2AFV NonAssociatedWithProgression
ENSG00000164032 H2AFZ o-o
ENSG00000100084 HIRA ---
ENSG00000196176 HIST1H4A ---
ENSG00000137309 HMGA1 o--b
ENSG00000117318 ID3 ---
ENSG00000104951 IL4I1 NonAssociatedWithProgression
ENSG00000129351 ILF3 -o-
ENSG00000071243 ING3 o--b
ENSG00000205339 IPO7 NonAssociatedWithProgression
ENSG00000165572 KBTBD6 o-+
ENSG00000120696 KBTBD7 NonAssociatedWithProgression
ENSG00000151079 KCNA6 NonAssociatedWithProgression
ENSG00000102554 KLF5 o-+
ENSG00000108424 KPNB1 o--a
ENSG00000135341 MAP3K7 NonAssociatedWithProgression
ENSG00000103495 MAZ o--a
ENSG00000073111 MCM2 o--a
ENSG00000104738 MCM4 o--a
ENSG00000076003 MCM6 o--a
ENSG00000166508 MCM7 o--b
ENSG00000125885 MCM8 oo+
ENSG00000185608 MRPL40 NonAssociatedWithProgression
ENSG00000095002 MSH2 +oo
ENSG00000204410 MSH5 NonAssociatedWithProgression
ENSG00000213347 MXD3 o--a
ENSG00000136997 MYC o--b
ENSG00000133026 MYH10 o--a
ENSG00000132780 NASP o--a
ENSG00000115053 NCL o--b
ENSG00000184613 NELL2 -oo
ENSG00000166197 NOLC1 o--b
ENSG00000213024 NUP62 o--a
ENSG00000162073 PAQR4 NonAssociatedWithProgression
ENSG00000007372 PAX6 NonAssociatedWithProgression
ENSG00000132646 PCNA -o-
ENSG00000111752 PHC1 -oo
ENSG00000116273 PHF13 NonAssociatedWithProgression
ENSG00000043143 PHF15 o--b
ENSG00000100410 PHF5A o--b
ENSG00000137193 PIM1 o--b
ENSG00000127564 PKMYT1 +-o
ENSG00000062822 POLD1 o--a
ENSG00000077514 POLD3 o+o
ENSG00000100479 POLE2 -o-
ENSG00000181222 POLR2A ---
ENSG00000253729 PRKDC o--b
ENSG00000112739 PRPF4B o+o
ENSG00000147224 PRPS1 o--a
ENSG00000101911 PRPS2 ---
ENSG00000099901 RANBP1 NonAssociatedWithProgression
ENSG00000161847 RAVER1 ---
ENSG00000162521 RBBP4 NonAssociatedWithProgression
ENSG00000080839 RBL1 +o+
ENSG00000008988 RPS20 o--a
ENSG00000100784 RPS6KA5 NonAssociatedWithProgression
ENSG00000144580 RQCD1 NonAssociatedWithProgression
ENSG00000171848 RRM2 o--a
ENSG00000065923 SLC9A7 -+o
ENSG00000176463 SLCO3A1 o--a
ENSG00000167088 SNRPD1 o--a
ENSG00000057252 SOAT1 NonAssociatedWithProgression
ENSG00000172845 SP3 NonAssociatedWithProgression
ENSG00000157216 SSBP3 o--a
ENSG00000118007 STAG1 NonAssociatedWithProgression
ENSG00000101972 STAG2 o--b
ENSG00000125834 STK35 ---
ENSG00000117632 STMN1 o--b
ENSG00000116030 SUMO1 NonAssociatedWithProgression
ENSG00000101945 SUV39H1 o--a
ENSG00000135316 SYNCRIP o--b
ENSG00000090447 TFAP4 o--b
ENSG00000161277 THAP8 -+o
ENSG00000120802 TMPO -o-
ENSG00000163781 TOPBP1 o+o
ENSG00000092445 TYRO3 o-+
ENSG00000174282 ZBTB4 o-+
ENSG00000033030 ZCCHC8 +oo
ENSG00000078487 ZCWPW1 -oo
ENSG00000165244 ZNF367 NonAssociatedWithProgression