PEACHi
GeneSet V$E2F1_Q4_01 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--b -4.3 0.01708 85.0 25.0 11.74
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000131503 ANKHD1 o--b
ENSG00000221838 AP4M1 NonAssociatedWithProgression
ENSG00000198826 ARHGAP11A oo-
ENSG00000032219 ARID4A o-+
ENSG00000143970 ASXL2 o--b
ENSG00000156802 ATAD2 NonAssociatedWithProgression
ENSG00000107669 ATE1 -+o
ENSG00000135390 ATP5G2 oo-
ENSG00000085224 ATRX -oo
ENSG00000100916 BRMS1L o--b
ENSG00000106144 CASP2 o--a
ENSG00000094916 CBX5 NonAssociatedWithProgression
ENSG00000082258 CCNT2 o-o
ENSG00000164045 CDC25A o--b
ENSG00000094804 CDC6 NonAssociatedWithProgression
ENSG00000144354 CDCA7 NonAssociatedWithProgression
ENSG00000102974 CTCF o--b
ENSG00000204209 DAXX o--b
ENSG00000156136 DCK ---
ENSG00000198924 DCLRE1A o-o
ENSG00000134574 DDB2 o--a
ENSG00000100201 DDX17 NonAssociatedWithProgression
ENSG00000108406 DHX40 oo-
ENSG00000007923 DNAJC11 o--a
ENSG00000130816 DNMT1 o-o
ENSG00000092964 DPYSL2 NonAssociatedWithProgression
ENSG00000101412 E2F1 o--b
ENSG00000112242 E2F3 NonAssociatedWithProgression
ENSG00000178982 EIF3K o+o
ENSG00000154928 EPHB1 -oo
ENSG00000112851 ERBB2IP NonAssociatedWithProgression
ENSG00000105722 ERF ---
ENSG00000106462 EZH2 NonAssociatedWithProgression
ENSG00000158169 FANCC o-o
ENSG00000108306 FBXL20 NonAssociatedWithProgression
ENSG00000112029 FBXO5 NonAssociatedWithProgression
ENSG00000112146 FBXO9 o++b
ENSG00000076258 FMO4 o++a
ENSG00000107485 GATA3 o+o
ENSG00000112312 GMNN NonAssociatedWithProgression
ENSG00000164032 H2AFZ o-o
ENSG00000124575 HIST1H1D ---
ENSG00000137309 HMGA1 o--b
ENSG00000198830 HMGN2 NonAssociatedWithProgression
ENSG00000117318 ID3 ---
ENSG00000178035 IMPDH2 o-o
ENSG00000071243 ING3 o--b
ENSG00000205339 IPO7 NonAssociatedWithProgression
ENSG00000104369 JPH1 NonAssociatedWithProgression
ENSG00000120696 KBTBD7 NonAssociatedWithProgression
ENSG00000151079 KCNA6 NonAssociatedWithProgression
ENSG00000102554 KLF5 o-+
ENSG00000108424 KPNB1 o--a
ENSG00000104814 MAP4K1 NonAssociatedWithProgression
ENSG00000168906 MAT2A ---
ENSG00000103495 MAZ o--a
ENSG00000073111 MCM2 o--a
ENSG00000104738 MCM4 o--a
ENSG00000076003 MCM6 o--a
ENSG00000166508 MCM7 o--b
ENSG00000125885 MCM8 oo+
ENSG00000134138 MEIS2 o++b
ENSG00000213347 MXD3 o--a
ENSG00000136997 MYC o--b
ENSG00000132780 NASP o--a
ENSG00000115053 NCL o--b
ENSG00000198646 NCOA6 o--b
ENSG00000174886 NDUFA11 o-o
ENSG00000196865 NHLRC2 NonAssociatedWithProgression
ENSG00000137497 NUMA1 o--b
ENSG00000124789 NUP153 o+-
ENSG00000113569 NUP155 NonAssociatedWithProgression
ENSG00000162073 PAQR4 NonAssociatedWithProgression
ENSG00000132646 PCNA -o-
ENSG00000152684 PELO o+o
ENSG00000116273 PHF13 NonAssociatedWithProgression
ENSG00000043143 PHF15 o--b
ENSG00000117461 PIK3R3 NonAssociatedWithProgression
ENSG00000196455 PIK3R4 NonAssociatedWithProgression
ENSG00000137193 PIM1 o--b
ENSG00000127564 PKMYT1 +-o
ENSG00000014138 POLA2 o++b
ENSG00000100479 POLE2 -o-
ENSG00000117751 PPP1R8 NonAssociatedWithProgression
ENSG00000108819 PPP1R9B -+o
ENSG00000148840 PPRC1 o--b
ENSG00000253729 PRKDC o--b
ENSG00000147224 PRPS1 o--a
ENSG00000187514 PTMA o--b
ENSG00000185236 RAB11B ---
ENSG00000051180 RAD51 NonAssociatedWithProgression
ENSG00000125970 RALY o--a
ENSG00000099901 RANBP1 NonAssociatedWithProgression
ENSG00000035928 RFC1 o--b
ENSG00000105372 RPS19 -o-
ENSG00000100784 RPS6KA5 NonAssociatedWithProgression
ENSG00000170145 SIK2 o--a
ENSG00000169375 SIN3A o--b
ENSG00000147100 SLC16A2 o++a
ENSG00000111371 SLC38A1 +-o
ENSG00000157106 SMG1 o+o
ENSG00000118007 STAG1 NonAssociatedWithProgression
ENSG00000101972 STAG2 o--b
ENSG00000125834 STK35 ---
ENSG00000117632 STMN1 o--b
ENSG00000101945 SUV39H1 o--a
ENSG00000161277 THAP8 -+o
ENSG00000106829 TLE4 NonAssociatedWithProgression
ENSG00000105576 TNPO2 o--a
ENSG00000198900 TOP1 o+o
ENSG00000163781 TOPBP1 o+o
ENSG00000070010 UFD1L o+-
ENSG00000162607 USP1 o--b
ENSG00000166483 WEE1 NonAssociatedWithProgression
ENSG00000147548 WHSC1L1 o--b
ENSG00000134308 YWHAQ o+-
ENSG00000033030 ZCCHC8 +oo
ENSG00000165244 ZNF367 NonAssociatedWithProgression