PEACHi
GeneSet V$E2F1_Q4 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--b -3.7 0.03976 87.0 24.0 12.02
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000032219 ARID4A o-+
ENSG00000241685 ARPC1A o+o
ENSG00000141480 ARRB2 ---
ENSG00000170653 ATF7 ---
ENSG00000100916 BRMS1L o--b
ENSG00000107938 C10orf137 NonAssociatedWithProgression
ENSG00000158636 C11orf30 NonAssociatedWithProgression
ENSG00000124596 C6orf130 o-o
ENSG00000164970 C9orf25 NonAssociatedWithProgression
ENSG00000122565 CBX3 o--a
ENSG00000141582 CBX4 o+-
ENSG00000094916 CBX5 NonAssociatedWithProgression
ENSG00000094804 CDC6 NonAssociatedWithProgression
ENSG00000111328 CDK2AP1 --o
ENSG00000111276 CDKN1B +o+
ENSG00000127586 CHTF18 NonAssociatedWithProgression
ENSG00000122966 CIT +-o
ENSG00000102974 CTCF o--b
ENSG00000144579 CTDSP1 o--a
ENSG00000154832 CXXC1 o--a
ENSG00000204209 DAXX o--b
ENSG00000138231 DBR1 o--b
ENSG00000198924 DCLRE1A o-o
ENSG00000134574 DDB2 o--a
ENSG00000100201 DDX17 NonAssociatedWithProgression
ENSG00000198231 DDX42 o--a
ENSG00000128191 DGCR8 NonAssociatedWithProgression
ENSG00000007923 DNAJC11 o--a
ENSG00000101412 E2F1 o--b
ENSG00000112242 E2F3 NonAssociatedWithProgression
ENSG00000165891 E2F7 NonAssociatedWithProgression
ENSG00000132507 EIF5A o--a
ENSG00000120616 EPC1 o--b
ENSG00000112851 ERBB2IP NonAssociatedWithProgression
ENSG00000100632 ERH NonAssociatedWithProgression
ENSG00000106462 EZH2 NonAssociatedWithProgression
ENSG00000149806 FAU o-o
ENSG00000112029 FBXO5 NonAssociatedWithProgression
ENSG00000112146 FBXO9 o++b
ENSG00000076258 FMO4 o++a
ENSG00000213420 GPC2 o+-
ENSG00000132522 GPS2 ---
ENSG00000189403 HMGB1 o--b
ENSG00000198830 HMGN2 NonAssociatedWithProgression
ENSG00000170144 HNRNPA3 ---
ENSG00000230989 HSBP1 NonAssociatedWithProgression
ENSG00000117318 ID3 ---
ENSG00000198700 IPO9 o--b
ENSG00000150995 ITPR1 o++b
ENSG00000104369 JPH1 NonAssociatedWithProgression
ENSG00000119682 KIAA0317 NonAssociatedWithProgression
ENSG00000090889 KIF4A NonAssociatedWithProgression
ENSG00000184445 KNTC1 o+o
ENSG00000025800 KPNA6 o--b
ENSG00000108424 KPNB1 o--a
ENSG00000146963 LUC7L2 o--a
ENSG00000145220 LYAR o--b
ENSG00000073803 MAP3K13 o++a
ENSG00000104738 MCM4 o--a
ENSG00000134138 MEIS2 o++b
ENSG00000149792 MRPL49 o-o
ENSG00000136997 MYC o--b
ENSG00000132780 NASP o--a
ENSG00000001167 NFYA NonAssociatedWithProgression
ENSG00000066136 NFYC NonAssociatedWithProgression
ENSG00000196865 NHLRC2 NonAssociatedWithProgression
ENSG00000124789 NUP153 o+-
ENSG00000105953 OGDH ---
ENSG00000117859 OSBPL9 o++b
ENSG00000132646 PCNA -o-
ENSG00000152684 PELO o+o
ENSG00000116273 PHF13 NonAssociatedWithProgression
ENSG00000117461 PIK3R3 NonAssociatedWithProgression
ENSG00000127564 PKMYT1 +-o
ENSG00000014138 POLA2 o++b
ENSG00000100479 POLE2 -o-
ENSG00000186298 PPP1CC o--b
ENSG00000117751 PPP1R8 NonAssociatedWithProgression
ENSG00000108819 PPP1R9B -+o
ENSG00000105568 PPP2R1A o--b
ENSG00000154001 PPP2R5E o-o
ENSG00000198056 PRIM1 ---
ENSG00000072062 PRKACA ---
ENSG00000130175 PRKCSH o--b
ENSG00000253729 PRKDC o--b
ENSG00000185236 RAB11B ---
ENSG00000051180 RAD51 NonAssociatedWithProgression
ENSG00000099901 RANBP1 NonAssociatedWithProgression
ENSG00000122257 RBBP6 ---
ENSG00000035928 RFC1 o--b
ENSG00000117748 RPA2 oo-
ENSG00000177189 RPS6KA3 NonAssociatedWithProgression
ENSG00000100784 RPS6KA5 NonAssociatedWithProgression
ENSG00000147010 SH3KBP1 +o+
ENSG00000170145 SIK2 o--a
ENSG00000169375 SIN3A o--b
ENSG00000145604 SKP2 o++b
ENSG00000163950 SLBP NonAssociatedWithProgression
ENSG00000111371 SLC38A1 +-o
ENSG00000134294 SLC38A2 oo-
ENSG00000029364 SLC39A9 NonAssociatedWithProgression
ENSG00000071189 SNX13 NonAssociatedWithProgression
ENSG00000167182 SP2 +oo
ENSG00000198369 SPRED2 o--a
ENSG00000118007 STAG1 NonAssociatedWithProgression
ENSG00000101972 STAG2 o--b
ENSG00000066923 STAG3 o--b
ENSG00000117632 STMN1 o--b
ENSG00000136854 STXBP1 -oo
ENSG00000168286 THAP11 o--b
ENSG00000187653 TMSL3 oo+
ENSG00000140416 TPM1 oo+
ENSG00000173334 TRIB1 o--b
ENSG00000130726 TRIM28 o--a
ENSG00000109332 UBE2D3 NonAssociatedWithProgression
ENSG00000070010 UFD1L o+-
ENSG00000173511 VEGFB o--b
ENSG00000158195 WASF2 NonAssociatedWithProgression
ENSG00000166483 WEE1 NonAssociatedWithProgression
ENSG00000147548 WHSC1L1 o--b
ENSG00000033030 ZCCHC8 +oo
ENSG00000152518 ZFP36L2 NonAssociatedWithProgression
ENSG00000179456 ZNF238 o-o
ENSG00000186187 ZNRF1 o-o