PEACHi
GeneSet V$E2F1_Q3_01 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
DownRegulated -3.4 0.03185 86.0 65.0 50.79
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000150967 ABCB9 o--a
ENSG00000138443 ABI2 o-o
ENSG00000004455 AK2 o--a
ENSG00000221838 AP4M1 NonAssociatedWithProgression
ENSG00000133794 ARNTL NonAssociatedWithProgression
ENSG00000136950 ARPC5L o--b
ENSG00000156802 ATAD2 NonAssociatedWithProgression
ENSG00000168646 AXIN2 o++b
ENSG00000157764 BRAF oo-
ENSG00000100916 BRMS1L o--b
ENSG00000197771 C10orf119 o+-
ENSG00000198663 C6orf89 ---
ENSG00000164970 C9orf25 NonAssociatedWithProgression
ENSG00000203993 C9orf37 o-o
ENSG00000198668 CALM1 NonAssociatedWithProgression
ENSG00000143933 CALM2 o--a
ENSG00000164045 CDC25A o--b
ENSG00000105810 CDK6 o--a
ENSG00000125817 CENPB o--b
ENSG00000163320 CGGBP1 NonAssociatedWithProgression
ENSG00000104853 CLPTM1 o--a
ENSG00000144579 CTDSP1 o--a
ENSG00000156136 DCK ---
ENSG00000107625 DDX50 NonAssociatedWithProgression
ENSG00000176124 DLEU1 -o-
ENSG00000231607 DLEU2 oo-
ENSG00000007923 DNAJC11 o--a
ENSG00000213551 DNAJC9 NonAssociatedWithProgression
ENSG00000130816 DNMT1 o-o
ENSG00000139318 DUSP6 NonAssociatedWithProgression
ENSG00000164086 DUSP7 o--a
ENSG00000101412 E2F1 o--b
ENSG00000134109 EDEM1 o--b
ENSG00000198692 EIF1AY NonAssociatedWithProgression
ENSG00000114867 EIF4G1 ---
ENSG00000100664 EIF5 o--b
ENSG00000132507 EIF5A o--a
ENSG00000106462 EZH2 NonAssociatedWithProgression
ENSG00000112146 FBXO9 o++b
ENSG00000033170 FUT8 -+o
ENSG00000143458 GABPB2 NonAssociatedWithProgression
ENSG00000100083 GGA1 o--b
ENSG00000112312 GMNN NonAssociatedWithProgression
ENSG00000172354 GNB2 ---
ENSG00000103342 GSPT1 NonAssociatedWithProgression
ENSG00000149397 HMBS ---
ENSG00000198830 HMGN2 NonAssociatedWithProgression
ENSG00000117318 ID3 ---
ENSG00000067829 IDH3G ---
ENSG00000178035 IMPDH2 o-o
ENSG00000170604 IRF2BP1 ---
ENSG00000137825 ITPKA o--b
ENSG00000171223 JUNB ---
ENSG00000169926 KLF13 oo-
ENSG00000178502 KLHL11 NonAssociatedWithProgression
ENSG00000108424 KPNB1 o--a
ENSG00000139517 LNX2 NonAssociatedWithProgression
ENSG00000157193 LRP8 o--a
ENSG00000161021 MAML1 o--b
ENSG00000166963 MAP1A o--b
ENSG00000155130 MARCKS +-o
ENSG00000103495 MAZ o--a
ENSG00000166508 MCM7 o--b
ENSG00000143995 MEIS1 o++b
ENSG00000134138 MEIS2 o++b
ENSG00000005483 MLL5 +oo
ENSG00000108292 MLLT6 o--a
ENSG00000011028 MRC2 o++a
ENSG00000136997 MYC o--b
ENSG00000147140 NONO o--b
ENSG00000154146 NRGN --o
ENSG00000065320 NTN1 o++a
ENSG00000139946 PELI2 +oo
ENSG00000109118 PHF12 o--a
ENSG00000142731 PLK4 o+-
ENSG00000186184 POLR1D o--a
ENSG00000146707 POMZP3 o--b
ENSG00000172531 PPP1CA o--a
ENSG00000186298 PPP1CC o--b
ENSG00000198056 PRIM1 ---
ENSG00000175166 PSMD2 ---
ENSG00000179262 RAD23A NonAssociatedWithProgression
ENSG00000099901 RANBP1 NonAssociatedWithProgression
ENSG00000080839 RBL1 +o+
ENSG00000122707 RECK NonAssociatedWithProgression
ENSG00000100784 RPS6KA5 NonAssociatedWithProgression
ENSG00000182568 SATB1 o--a
ENSG00000119042 SATB2 -+o
ENSG00000161956 SENP3 o--b
ENSG00000108528 SLC25A11 ---
ENSG00000155287 SLC25A28 o--b
ENSG00000116704 SLC35D1 o++b
ENSG00000107742 SPOCK2 +o+
ENSG00000180879 SSR4 ---
ENSG00000118007 STAG1 NonAssociatedWithProgression
ENSG00000101972 STAG2 o--b
ENSG00000117632 STMN1 o--b
ENSG00000135316 SYNCRIP o--b
ENSG00000140332 TLE3 ---
ENSG00000149582 TMEM25 -+o
ENSG00000064419 TNPO3 NonAssociatedWithProgression
ENSG00000163781 TOPBP1 o+o
ENSG00000196511 TPK1 -+o
ENSG00000204599 TRIM39 oo-
ENSG00000092439 TRPM7 NonAssociatedWithProgression
ENSG00000147854 UHRF2 o-o
ENSG00000049245 VAMP3 NonAssociatedWithProgression
ENSG00000166483 WEE1 NonAssociatedWithProgression
ENSG00000143324 XPR1 -+o
ENSG00000198492 YTHDF2 o--a
ENSG00000134308 YWHAQ o+-
ENSG00000078487 ZCWPW1 -oo
ENSG00000152518 ZFP36L2 NonAssociatedWithProgression
ENSG00000171467 ZNF318 NonAssociatedWithProgression
ENSG00000165244 ZNF367 NonAssociatedWithProgression