PEACHi
GeneSet V$CREB_Q4 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
oo- -3.9 0.03441 80.0 7.0 1.52
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000204310 AGPAT1 o--b
ENSG00000135541 AHI1 NonAssociatedWithProgression
ENSG00000145362 ANK2 +oo
ENSG00000132466 ANKRD17 ---
ENSG00000162772 ATF3 +-o
ENSG00000185883 ATP6V0C o--b
ENSG00000204427 BAT5 +o+
ENSG00000104765 BNIP3L NonAssociatedWithProgression
ENSG00000157764 BRAF oo-
ENSG00000095564 BTAF1 NonAssociatedWithProgression
ENSG00000124920 C11orf9 -oo
ENSG00000119669 C14orf4 NonAssociatedWithProgression
ENSG00000143793 C1orf35 o--a
ENSG00000122565 CBX3 o--a
ENSG00000141570 CBX8 ---
ENSG00000171097 CCBL1 NonAssociatedWithProgression
ENSG00000198087 CD2AP NonAssociatedWithProgression
ENSG00000070831 CDC42 +oo
ENSG00000123989 CHPF ---
ENSG00000139182 CLSTN3 NonAssociatedWithProgression
ENSG00000163703 CRELD1 --o
ENSG00000176102 CSTF3 NonAssociatedWithProgression
ENSG00000102974 CTCF o--b
ENSG00000083799 CYLD o--b
ENSG00000215301 DDX3X oo-
ENSG00000174953 DHX36 NonAssociatedWithProgression
ENSG00000213551 DNAJC9 NonAssociatedWithProgression
ENSG00000120129 DUSP1 o--a
ENSG00000066044 ELAVL1 NonAssociatedWithProgression
ENSG00000102890 ELMO3 NonAssociatedWithProgression
ENSG00000012660 ELOVL5 NonAssociatedWithProgression
ENSG00000105722 ERF ---
ENSG00000144554 FANCD2 oo+
ENSG00000170345 FOS NonAssociatedWithProgression
ENSG00000125740 FOSB +-o
ENSG00000138757 G3BP2 NonAssociatedWithProgression
ENSG00000178950 GAK o--a
ENSG00000087460 GNAS NonAssociatedWithProgression
ENSG00000204590 GNL1 o--a
ENSG00000181773 GPR3 ---
ENSG00000077235 GTF3C1 o--b
ENSG00000125968 ID1 o--a
ENSG00000104365 IKBKB o++a
ENSG00000071243 ING3 o--b
ENSG00000111653 ING4 o+-
ENSG00000177508 IRX3 oo-
ENSG00000169926 KLF13 oo-
ENSG00000134333 LDHA +-o
ENSG00000049323 LTBP1 -oo
ENSG00000073803 MAP3K13 o++a
ENSG00000135341 MAP3K7 NonAssociatedWithProgression
ENSG00000139793 MBNL2 NonAssociatedWithProgression
ENSG00000140406 MESDC1 +oo
ENSG00000148187 MRRF o--a
ENSG00000092841 MYL6 o-o
ENSG00000130414 NDUFA10 -o-
ENSG00000196712 NF1 o+o
ENSG00000131669 NINJ1 NonAssociatedWithProgression
ENSG00000126883 NUP214 NonAssociatedWithProgression
ENSG00000110713 NUP98 o--a
ENSG00000105953 OGDH ---
ENSG00000117859 OSBPL9 o++b
ENSG00000070756 PABPC1 o--b
ENSG00000007168 PAFAH1B1 o+-
ENSG00000149269 PAK1 oo+
ENSG00000178921 PFAS ---
ENSG00000144283 PKP4 NonAssociatedWithProgression
ENSG00000142731 PLK4 o+-
ENSG00000224201 PNMA6A NonAssociatedWithProgression
ENSG00000138398 PPIG o--b
ENSG00000100614 PPM1A o--a
ENSG00000087074 PPP1R15A ---
ENSG00000221914 PPP2R2A o--b
ENSG00000122490 PQLC1 o-o
ENSG00000204576 PRR3 o--b
ENSG00000204264 PSMB8 o--b
ENSG00000169228 RAB24 o-+
ENSG00000105649 RAB3A NonAssociatedWithProgression
ENSG00000175582 RAB6A o++b
ENSG00000108557 RAI1 o--b
ENSG00000101773 RBBP8 NonAssociatedWithProgression
ENSG00000076067 RBMS2 NonAssociatedWithProgression
ENSG00000104856 RELB o--b
ENSG00000204227 RING1 o--a
ENSG00000146083 RNF44 NonAssociatedWithProgression
ENSG00000204308 RNF5 o--b
ENSG00000213741 RPS29 NonAssociatedWithProgression
ENSG00000177189 RPS6KA3 NonAssociatedWithProgression
ENSG00000160753 RUSC1 o-o
ENSG00000198794 SCAMP5 ---
ENSG00000117118 SDHB NonAssociatedWithProgression
ENSG00000163904 SENP2 o--a
ENSG00000170145 SIK2 o--a
ENSG00000111371 SLC38A1 +-o
ENSG00000134294 SLC38A2 oo-
ENSG00000170365 SMAD1 o++a
ENSG00000180008 SOCS4 +o+
ENSG00000042317 SPATA7 +o+
ENSG00000198911 SREBF2 ---
ENSG00000118707 TGIF2 ---
ENSG00000079134 THOC1 NonAssociatedWithProgression
ENSG00000140332 TLE3 ---
ENSG00000078804 TP53INP2 NonAssociatedWithProgression
ENSG00000173334 TRIB1 o--b
ENSG00000204599 TRIM39 oo-
ENSG00000221983 UBA52 o--a
ENSG00000188021 UBQLN2 +oo
ENSG00000198554 WDHD1 ---
ENSG00000047188 YTHDC2 NonAssociatedWithProgression
ENSG00000096654 ZNF184 +o+
ENSG00000173276 ZNF295 oo-
ENSG00000165244 ZNF367 NonAssociatedWithProgression
ENSG00000074755 ZZEF1 ---