PEACHi
GeneSet V$CREB_Q2_01 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
oo- -3.7 0.03976 64.0 6.0 1.22
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000159842 ABR oo+
ENSG00000101126 ADNP NonAssociatedWithProgression
ENSG00000135541 AHI1 NonAssociatedWithProgression
ENSG00000062725 APPBP2 o-o
ENSG00000081181 ARG2 NonAssociatedWithProgression
ENSG00000204427 BAT5 +o+
ENSG00000136717 BIN1 --o
ENSG00000157764 BRAF oo-
ENSG00000095564 BTAF1 NonAssociatedWithProgression
ENSG00000119669 C14orf4 NonAssociatedWithProgression
ENSG00000146350 C6orf170 o++b
ENSG00000141570 CBX8 ---
ENSG00000171097 CCBL1 NonAssociatedWithProgression
ENSG00000198087 CD2AP NonAssociatedWithProgression
ENSG00000070831 CDC42 +oo
ENSG00000138778 CENPE NonAssociatedWithProgression
ENSG00000123989 CHPF ---
ENSG00000139182 CLSTN3 NonAssociatedWithProgression
ENSG00000198791 CNOT7 --o
ENSG00000095794 CREM o+o
ENSG00000083799 CYLD o--b
ENSG00000204843 DCTN1 ---
ENSG00000182810 DDX28 NonAssociatedWithProgression
ENSG00000174953 DHX36 NonAssociatedWithProgression
ENSG00000101457 DNTTIP1 NonAssociatedWithProgression
ENSG00000120129 DUSP1 o--a
ENSG00000120738 EGR1 NonAssociatedWithProgression
ENSG00000143420 ENSA oo-
ENSG00000105722 ERF ---
ENSG00000125740 FOSB +-o
ENSG00000163521 GLB1L NonAssociatedWithProgression
ENSG00000204590 GNL1 o--a
ENSG00000170412 GPRC5C NonAssociatedWithProgression
ENSG00000094631 HDAC6 o--a
ENSG00000125968 ID1 o--a
ENSG00000104365 IKBKB o++a
ENSG00000071243 ING3 o--b
ENSG00000177606 JUN NonAssociatedWithProgression
ENSG00000130522 JUND o--b
ENSG00000117153 KLHL12 o-o
ENSG00000134333 LDHA +-o
ENSG00000049323 LTBP1 -oo
ENSG00000139793 MBNL2 NonAssociatedWithProgression
ENSG00000076706 MCAM o-o
ENSG00000148187 MRRF o--a
ENSG00000020129 NCDN NonAssociatedWithProgression
ENSG00000196712 NF1 o+o
ENSG00000163273 NPPC oo-
ENSG00000007168 PAFAH1B1 o+-
ENSG00000149269 PAK1 oo+
ENSG00000205268 PDE7A ---
ENSG00000178921 PFAS ---
ENSG00000254093 PINX1 o--a
ENSG00000142731 PLK4 o+-
ENSG00000224201 PNMA6A NonAssociatedWithProgression
ENSG00000134283 PPHLN1 -o-
ENSG00000100614 PPM1A o--a
ENSG00000087074 PPP1R15A ---
ENSG00000221914 PPP2R2A o--b
ENSG00000204576 PRR3 o--b
ENSG00000159792 PSKH1 o-o
ENSG00000169228 RAB24 o-+
ENSG00000108557 RAI1 o--b
ENSG00000119446 RBM18 -+o
ENSG00000108469 RECQL5 NonAssociatedWithProgression
ENSG00000104856 RELB o--b
ENSG00000158717 RNF166 ---
ENSG00000146083 RNF44 NonAssociatedWithProgression
ENSG00000213741 RPS29 NonAssociatedWithProgression
ENSG00000177189 RPS6KA3 NonAssociatedWithProgression
ENSG00000117118 SDHB NonAssociatedWithProgression
ENSG00000163904 SENP2 o--a
ENSG00000148339 SLC25A25 ---
ENSG00000174446 SNAPC5 o++a
ENSG00000008294 SPAG9 oo-
ENSG00000198369 SPRED2 o--a
ENSG00000198911 SREBF2 ---
ENSG00000100883 SRP54 -+o
ENSG00000115661 STK16 o-o
ENSG00000135316 SYNCRIP o--b
ENSG00000132718 SYT11 NonAssociatedWithProgression
ENSG00000064313 TAF2 o-o
ENSG00000118707 TGIF2 ---
ENSG00000115970 THADA NonAssociatedWithProgression
ENSG00000079134 THOC1 NonAssociatedWithProgression
ENSG00000133112 TPT1 oo-
ENSG00000173334 TRIB1 o--b
ENSG00000204599 TRIM39 oo-
ENSG00000119048 UBE2B o+-
ENSG00000186591 UBE2H NonAssociatedWithProgression
ENSG00000110344 UBE4A NonAssociatedWithProgression
ENSG00000147548 WHSC1L1 o--b
ENSG00000047188 YTHDC2 NonAssociatedWithProgression
ENSG00000067646 ZFY NonAssociatedWithProgression
ENSG00000155256 ZFYVE27 ---
ENSG00000165244 ZNF367 NonAssociatedWithProgression