PEACHi
GeneSet V$CEBP_01 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
+-o -3.5 0.04965 71.0 8.0 2.22
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000131473 ACLY o--a
ENSG00000148926 ADM +oo
ENSG00000100852 ARHGAP5 o++b
ENSG00000085224 ATRX -oo
ENSG00000137936 BCAR3 o++b
ENSG00000127152 BCL11B NonAssociatedWithProgression
ENSG00000134986 C5orf13 NonAssociatedWithProgression
ENSG00000148153 C9orf80 -oo
ENSG00000067191 CACNB1 ---
ENSG00000147044 CASK o++b
ENSG00000108091 CCDC6 o+-
ENSG00000170791 CHCHD7 NonAssociatedWithProgression
ENSG00000124177 CHD6 NonAssociatedWithProgression
ENSG00000113742 CPEB4 NonAssociatedWithProgression
ENSG00000062485 CS +-o
ENSG00000103653 CSK o--b
ENSG00000100197 CYP2D6 ---
ENSG00000196730 DAPK1 o++a
ENSG00000141141 DDX52 NonAssociatedWithProgression
ENSG00000197959 DNM3 o++b
ENSG00000088387 DOCK9 o++a
ENSG00000158050 DUSP2 o--b
ENSG00000135999 EPC2 oo-
ENSG00000126860 EVI2A +-o
ENSG00000125740 FOSB +-o
ENSG00000114861 FOXP1 oo-
ENSG00000033170 FUT8 -+o
ENSG00000128266 GNAZ NonAssociatedWithProgression
ENSG00000233276 GPX1 ---
ENSG00000063854 HAGH o--a
ENSG00000105856 HBP1 o+o
ENSG00000068024 HDAC4 o--b
ENSG00000164683 HEY1 +o+
ENSG00000120093 HOXB3 oo+
ENSG00000115756 HPCAL1 --o
ENSG00000125430 HS3ST3B1 +o+
ENSG00000115461 IGFBP5 NonAssociatedWithProgression
ENSG00000147166 ITGB1BP2 -o-
ENSG00000008083 JARID2 o-o
ENSG00000102753 KPNA3 NonAssociatedWithProgression
ENSG00000161904 LEMD2 o--a
ENSG00000049323 LTBP1 -oo
ENSG00000071054 MAP4K4 +-o
ENSG00000167548 MLL2 o-o
ENSG00000070444 MNT NonAssociatedWithProgression
ENSG00000007944 MYLIP ---
ENSG00000020129 NCDN NonAssociatedWithProgression
ENSG00000067141 NEO1 o++a
ENSG00000125820 NKX2-2 o-+
ENSG00000170485 NPAS2 o-+
ENSG00000113580 NR3C1 o--a
ENSG00000213281 NRAS o--b
ENSG00000112664 NUDT3 o--a
ENSG00000113569 NUP155 NonAssociatedWithProgression
ENSG00000107960 OBFC1 --o
ENSG00000115507 OTX1 NonAssociatedWithProgression
ENSG00000111845 PAK1IP1 NonAssociatedWithProgression
ENSG00000132326 PER2 +-o
ENSG00000132664 POLR3F o-o
ENSG00000175175 PPM1E -oo
ENSG00000213639 PPP1CB +-o
ENSG00000113575 PPP2CA o--b
ENSG00000170325 PRDM10 o+o
ENSG00000129084 PSMA1 o--a
ENSG00000185129 PURA ---
ENSG00000125970 RALY o--a
ENSG00000153250 RBMS1 o++b
ENSG00000084093 REST NonAssociatedWithProgression
ENSG00000138835 RGS3 o++a
ENSG00000069667 RORA NonAssociatedWithProgression
ENSG00000179918 SEPHS2 o--b
ENSG00000198736 SEPX1 NonAssociatedWithProgression
ENSG00000102100 SLC35A2 o-+
ENSG00000168807 SNTB2 o--b
ENSG00000157216 SSBP3 o--a
ENSG00000165283 STOML2 ---
ENSG00000188612 SUMO2 NonAssociatedWithProgression
ENSG00000092201 SUPT16H o--a
ENSG00000213246 SUPT4H1 o--a
ENSG00000054654 SYNE2 o--b
ENSG00000101849 TBL1X +-o
ENSG00000135605 TEC -+o
ENSG00000198900 TOP1 o+o
ENSG00000140416 TPM1 oo+
ENSG00000164548 TRA2A NonAssociatedWithProgression
ENSG00000170832 USP32 NonAssociatedWithProgression
ENSG00000165392 WRN +oo
ENSG00000198373 WWP2 +-o
ENSG00000149658 YTHDF1 o--a
ENSG00000213588 ZBTB9 o--a
ENSG00000125945 ZNF436 +o+
ENSG00000148143 ZNF462 NonAssociatedWithProgression