PEACHi
GeneSet V$CEBPB_01 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
+-o -3.6 0.04443 83.0 9.0 2.6
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000167315 ACAA2 -+o
ENSG00000149925 ALDOA o--b
ENSG00000167522 ANKRD11 o--b
ENSG00000166747 AP1G1 o+-
ENSG00000182287 AP1S2 -+o
ENSG00000134982 APC NonAssociatedWithProgression
ENSG00000049618 ARID1B o+o
ENSG00000104081 BMF +-o
ENSG00000104765 BNIP3L NonAssociatedWithProgression
ENSG00000197771 C10orf119 o+-
ENSG00000156030 C14orf43 o--a
ENSG00000196227 C20orf177 o++b
ENSG00000131043 C20orf4 NonAssociatedWithProgression
ENSG00000134986 C5orf13 NonAssociatedWithProgression
ENSG00000067191 CACNB1 ---
ENSG00000147044 CASK o++b
ENSG00000141582 CBX4 o+-
ENSG00000163660 CCNL1 NonAssociatedWithProgression
ENSG00000163171 CDC42EP3 NonAssociatedWithProgression
ENSG00000134255 CEPT1 o++b
ENSG00000165410 CFL2 o--a
ENSG00000173575 CHD2 o--b
ENSG00000183765 CHEK2 ---
ENSG00000102805 CLN5 NonAssociatedWithProgression
ENSG00000213923 CSNK1E o--b
ENSG00000119326 CTNNAL1 o++b
ENSG00000175197 DDIT3 +-o
ENSG00000213782 DDX47 o-o
ENSG00000120129 DUSP1 o--a
ENSG00000157540 DYRK1A NonAssociatedWithProgression
ENSG00000161960 EIF4A1 -o-
ENSG00000102890 ELMO3 NonAssociatedWithProgression
ENSG00000100393 EP300 o++b
ENSG00000106123 EPHB6 o--b
ENSG00000120705 ETF1 o--a
ENSG00000109670 FBXW7 o+-
ENSG00000132589 FLOT2 o--a
ENSG00000114861 FOXP1 oo-
ENSG00000106105 GARS +-o
ENSG00000181773 GPR3 ---
ENSG00000233276 GPX1 ---
ENSG00000196277 GRM7 NonAssociatedWithProgression
ENSG00000104812 GYS1 o--a
ENSG00000132475 H3F3B o--b
ENSG00000115461 IGFBP5 NonAssociatedWithProgression
ENSG00000110944 IL23A NonAssociatedWithProgression
ENSG00000106348 IMPDH1 o--a
ENSG00000113263 ITK NonAssociatedWithProgression
ENSG00000096433 ITPR3 o-o
ENSG00000102554 KLF5 o-+
ENSG00000122550 KLHL7 o+o
ENSG00000161904 LEMD2 o--a
ENSG00000143013 LMO4 -+o
ENSG00000173621 LRFN4 ---
ENSG00000123384 LRP1 NonAssociatedWithProgression
ENSG00000169641 LUZP1 --o
ENSG00000102316 MAGED2 ---
ENSG00000034152 MAP2K3 ---
ENSG00000155130 MARCKS +-o
ENSG00000151332 MBIP o+o
ENSG00000152601 MBNL1 NonAssociatedWithProgression
ENSG00000187098 MITF o--b
ENSG00000130150 MOSPD2 o+o
ENSG00000109063 MYH3 NonAssociatedWithProgression
ENSG00000120137 PANK3 +oo
ENSG00000165494 PCF11 oo-
ENSG00000141179 PCTP ---
ENSG00000123360 PDE1B o-+
ENSG00000043143 PHF15 o--b
ENSG00000145675 PIK3R1 o--a
ENSG00000137193 PIM1 o--b
ENSG00000182621 PLCB1 -+o
ENSG00000137841 PLCB2 o-+
ENSG00000140521 POLG o--b
ENSG00000100614 PPM1A o--a
ENSG00000213639 PPP1CB +-o
ENSG00000123131 PRDX4 o--a
ENSG00000089902 RCOR1 o-o
ENSG00000138835 RGS3 o++a
ENSG00000143878 RHOB +-o
ENSG00000069667 RORA NonAssociatedWithProgression
ENSG00000183207 RUVBL2 o--a
ENSG00000031698 SARS NonAssociatedWithProgression
ENSG00000183605 SFXN4 o--b
ENSG00000165915 SLC39A13 ---
ENSG00000008294 SPAG9 oo-
ENSG00000187678 SPRY4 +-o
ENSG00000096063 SRPK1 o--a
ENSG00000198648 STK39 o--b
ENSG00000115808 STRN o+o
ENSG00000135316 SYNCRIP o--b
ENSG00000101849 TBL1X +-o
ENSG00000114126 TFDP2 o--b
ENSG00000068323 TFE3 o--a
ENSG00000141232 TOB1 NonAssociatedWithProgression
ENSG00000198467 TPM2 ---
ENSG00000173334 TRIB1 o--b
ENSG00000106477 TSGA14 -+o
ENSG00000124486 USP9X +-o
ENSG00000049245 VAMP3 NonAssociatedWithProgression
ENSG00000129003 VPS13C NonAssociatedWithProgression
ENSG00000147548 WHSC1L1 o--b
ENSG00000157077 ZFYVE9 oo+
ENSG00000179456 ZNF238 o-o