PEACHi
GeneSet V$CDX2_Q5 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
oo- -3.4 0.04965 51.0 5.0 0.97
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000126016 AMOT NonAssociatedWithProgression
ENSG00000182287 AP1S2 -+o
ENSG00000122644 ARL4A NonAssociatedWithProgression
ENSG00000135390 ATP5G2 oo-
ENSG00000112182 BACH2 +-o
ENSG00000174483 BBS1 ---
ENSG00000168283 BMI1 NonAssociatedWithProgression
ENSG00000155640 C10orf12 NonAssociatedWithProgression
ENSG00000134986 C5orf13 NonAssociatedWithProgression
ENSG00000078699 CBFA2T2 o--a
ENSG00000165410 CFL2 o--a
ENSG00000170791 CHCHD7 NonAssociatedWithProgression
ENSG00000175040 CHST2 NonAssociatedWithProgression
ENSG00000141367 CLTC -o-
ENSG00000146592 CREB5 +oo
ENSG00000100592 DAAM1 o++b
ENSG00000115866 DARS NonAssociatedWithProgression
ENSG00000188641 DPYD -+o
ENSG00000004975 DVL2 NonAssociatedWithProgression
ENSG00000109911 ELP4 NonAssociatedWithProgression
ENSG00000114861 FOXP1 oo-
ENSG00000128683 GAD1 -+o
ENSG00000185838 GNB1L o--a
ENSG00000132475 H3F3B o--b
ENSG00000149948 HMGA2 oo-
ENSG00000120093 HOXB3 oo+
ENSG00000165458 INPPL1 ---
ENSG00000129250 KIF1C +o+
ENSG00000116678 LEPR NonAssociatedWithProgression
ENSG00000136141 LRCH1 o--b
ENSG00000007392 LUC7L o--b
ENSG00000169032 MAP2K1 NonAssociatedWithProgression
ENSG00000137764 MAP2K5 o--a
ENSG00000204406 MBD5 -+o
ENSG00000152601 MBNL1 NonAssociatedWithProgression
ENSG00000139793 MBNL2 NonAssociatedWithProgression
ENSG00000012174 MBTPS2 oo+
ENSG00000143995 MEIS1 o++b
ENSG00000134138 MEIS2 o++b
ENSG00000171843 MLLT3 oo+
ENSG00000070444 MNT NonAssociatedWithProgression
ENSG00000141027 NCOR1 NonAssociatedWithProgression
ENSG00000101079 NDRG3 --o
ENSG00000067141 NEO1 o++a
ENSG00000147862 NFIB NonAssociatedWithProgression
ENSG00000163623 NKX6-1 ---
ENSG00000136448 NMT1 o--b
ENSG00000007372 PAX6 NonAssociatedWithProgression
ENSG00000165494 PCF11 oo-
ENSG00000156973 PDE6D NonAssociatedWithProgression
ENSG00000117461 PIK3R3 NonAssociatedWithProgression
ENSG00000181690 PLAG1 oo-
ENSG00000126003 PLAGL2 +-o
ENSG00000160783 PMF1 o-o
ENSG00000176903 PNMA1 +oo
ENSG00000101346 POFUT1 -oo
ENSG00000058272 PPP1R12A o+o
ENSG00000126432 PRDX5 o--a
ENSG00000148334 PTGES2 NonAssociatedWithProgression
ENSG00000048392 RRM2B -+o
ENSG00000047634 SCML1 NonAssociatedWithProgression
ENSG00000187231 SESTD1 o-+
ENSG00000170365 SMAD1 o++a
ENSG00000124766 SOX4 +oo
ENSG00000135250 SRPK2 o-o
ENSG00000157216 SSBP3 o--a
ENSG00000118007 STAG1 NonAssociatedWithProgression
ENSG00000157625 TAB3 o+o
ENSG00000106829 TLE4 NonAssociatedWithProgression
ENSG00000141232 TOB1 NonAssociatedWithProgression
ENSG00000124496 TRERF1 --o
ENSG00000109654 TRIM2 o+o
ENSG00000175063 UBE2C o-o
ENSG00000173218 VANGL1 o--a
ENSG00000176871 WSB2 o++b
ENSG00000130227 XPO7 o--b
ENSG00000205189 ZBTB10 NonAssociatedWithProgression
ENSG00000019995 ZRANB1 NonAssociatedWithProgression