PEACHi
GeneSet V$CACCCBINDINGFACTOR_Q6 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
DownRegulated -3.1 0.04536 74.0 56.0 43.7
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000183475 ASB7 NonAssociatedWithProgression
ENSG00000159199 ATP5G1 NonAssociatedWithProgression
ENSG00000119866 BCL11A ---
ENSG00000108578 BLMH NonAssociatedWithProgression
ENSG00000104081 BMF +-o
ENSG00000204256 BRD2 o--b
ENSG00000198668 CALM1 NonAssociatedWithProgression
ENSG00000108509 CAMTA2 --o
ENSG00000004897 CDC27 NonAssociatedWithProgression
ENSG00000135446 CDK4 o--a
ENSG00000124762 CDKN1A oo-
ENSG00000111642 CHD4 o--b
ENSG00000164442 CITED2 o++b
ENSG00000149970 CNKSR2 -oo
ENSG00000095794 CREM o+o
ENSG00000167193 CRK o+o
ENSG00000204843 DCTN1 ---
ENSG00000184047 DIABLO o--a
ENSG00000091140 DLD NonAssociatedWithProgression
ENSG00000161326 DUSP14 o++b
ENSG00000157540 DYRK1A NonAssociatedWithProgression
ENSG00000156508 EEF1A1 o--a
ENSG00000172638 EFEMP2 NonAssociatedWithProgression
ENSG00000143590 EFNA3 ---
ENSG00000132507 EIF5A o--a
ENSG00000244405 ETV5 +-o
ENSG00000138757 G3BP2 NonAssociatedWithProgression
ENSG00000142252 GEMIN7 o--b
ENSG00000108262 GIT1 -o-
ENSG00000163521 GLB1L NonAssociatedWithProgression
ENSG00000114353 GNAI2 --o
ENSG00000172354 GNB2 ---
ENSG00000198873 GRK5 +oo
ENSG00000114315 HES1 NonAssociatedWithProgression
ENSG00000100644 HIF1A NonAssociatedWithProgression
ENSG00000198830 HMGN2 NonAssociatedWithProgression
ENSG00000117318 ID3 ---
ENSG00000115461 IGFBP5 NonAssociatedWithProgression
ENSG00000147168 IL2RG o-o
ENSG00000132470 ITGB4 ---
ENSG00000008083 JARID2 o-o
ENSG00000130522 JUND o--b
ENSG00000173801 JUP o-o
ENSG00000170049 KCNAB3 ---
ENSG00000102057 KCND1 ---
ENSG00000131149 KIAA0182 o--b
ENSG00000169926 KLF13 oo-
ENSG00000198728 LDB1 o--b
ENSG00000182541 LIMK2 o--a
ENSG00000123384 LRP1 NonAssociatedWithProgression
ENSG00000213903 LTB4R ---
ENSG00000186868 MAPT o++a
ENSG00000143995 MEIS1 o++b
ENSG00000070444 MNT NonAssociatedWithProgression
ENSG00000123562 MORF4L2 NonAssociatedWithProgression
ENSG00000197879 MYO1C ---
ENSG00000160949 NFKBIL2 ---
ENSG00000171840 NINJ2 o--b
ENSG00000123213 NLN NonAssociatedWithProgression
ENSG00000167770 OTUB1 --o
ENSG00000115507 OTX1 NonAssociatedWithProgression
ENSG00000100836 PABPN1 o--a
ENSG00000090097 PCBP4 o-o
ENSG00000165494 PCF11 oo-
ENSG00000109118 PHF12 o--a
ENSG00000184381 PLA2G6 ---
ENSG00000181929 PRKAG1 ---
ENSG00000119318 RAD23B oo-
ENSG00000167771 RCOR2 NonAssociatedWithProgression
ENSG00000169220 RGS14 o--b
ENSG00000182732 RGS6 o++a
ENSG00000114993 RTKN NonAssociatedWithProgression
ENSG00000125744 RTN2 o--a
ENSG00000106366 SERPINE1 o+-
ENSG00000197860 SGTB o--b
ENSG00000148341 SH3GLB2 ---
ENSG00000004864 SLC25A13 NonAssociatedWithProgression
ENSG00000125648 SLC25A23 ---
ENSG00000109062 SLC9A3R1 o--a
ENSG00000135632 SMYD5 ---
ENSG00000105866 SP4 NonAssociatedWithProgression
ENSG00000008294 SPAG9 oo-
ENSG00000136158 SPRY2 o+o
ENSG00000187678 SPRY4 +-o
ENSG00000101972 STAG2 o--b
ENSG00000115661 STK16 o-o
ENSG00000101849 TBL1X +-o
ENSG00000151923 TIAL1 o+o
ENSG00000175274 TP53I11 ---
ENSG00000197323 TRIM33 NonAssociatedWithProgression
ENSG00000107341 UBE2R2 -o-
ENSG00000155313 USP25 o++b
ENSG00000108379 WNT3 o+o
ENSG00000082898 XPO1 o-o
ENSG00000134684 YARS o--b
ENSG00000198492 YTHDF2 o--a
ENSG00000108953 YWHAE NonAssociatedWithProgression
ENSG00000005889 ZFX o--b
ENSG00000178764 ZHX2 NonAssociatedWithProgression
ENSG00000126746 ZNF384 o+o