PEACHi
GeneSet V$CACBINDINGPROTEIN_Q6 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
DownRegulated -3.2 0.03856 75.0 57.0 44.29
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000127837 AAMP o--a
ENSG00000100813 ACIN1 ---
ENSG00000105221 AKT2 o--a
ENSG00000166747 AP1G1 o+-
ENSG00000134287 ARF3 o--a
ENSG00000100852 ARHGAP5 o++b
ENSG00000163466 ARPC2 -o-
ENSG00000162772 ATF3 +-o
ENSG00000185883 ATP6V0C o--b
ENSG00000119866 BCL11A ---
ENSG00000110987 BCL7A -o-
ENSG00000166272 C10orf26 ---
ENSG00000183741 CBX6 o--b
ENSG00000011021 CLCN6 o+o
ENSG00000060138 CSDA -o-
ENSG00000204843 DCTN1 ---
ENSG00000175203 DCTN2 --o
ENSG00000100201 DDX17 NonAssociatedWithProgression
ENSG00000011332 DPF1 o--a
ENSG00000156508 EEF1A1 o--a
ENSG00000114867 EIF4G1 ---
ENSG00000120616 EPC1 o--b
ENSG00000114353 GNAI2 --o
ENSG00000114450 GNB4 -+o
ENSG00000198873 GRK5 +oo
ENSG00000051620 HEBP2 -o-
ENSG00000100644 HIF1A NonAssociatedWithProgression
ENSG00000115461 IGFBP5 NonAssociatedWithProgression
ENSG00000040933 INPP4A NonAssociatedWithProgression
ENSG00000091409 ITGA6 NonAssociatedWithProgression
ENSG00000150995 ITPR1 o++b
ENSG00000128928 IVD o--a
ENSG00000132361 KIAA0664 ---
ENSG00000129250 KIF1C +o+
ENSG00000084731 KIF3C ---
ENSG00000126259 KIRREL2 ---
ENSG00000169926 KLF13 oo-
ENSG00000184445 KNTC1 o+o
ENSG00000108424 KPNB1 o--a
ENSG00000163463 KRTCAP2 o-o
ENSG00000002834 LASP1 o--b
ENSG00000123384 LRP1 NonAssociatedWithProgression
ENSG00000102316 MAGED2 ---
ENSG00000166963 MAP1A o--b
ENSG00000072518 MARK2 ---
ENSG00000166987 MBD6 o--b
ENSG00000116604 MEF2D o--b
ENSG00000196588 MKL1 ---
ENSG00000070444 MNT NonAssociatedWithProgression
ENSG00000177000 MTHFR o-o
ENSG00000173171 MTX1 o--a
ENSG00000133026 MYH10 o--a
ENSG00000020129 NCDN NonAssociatedWithProgression
ENSG00000158864 NDUFS2 --o
ENSG00000136448 NMT1 o--b
ENSG00000134250 NOTCH2 o-o
ENSG00000154146 NRGN --o
ENSG00000100836 PABPN1 o--a
ENSG00000109118 PHF12 o--a
ENSG00000073921 PICALM +o+
ENSG00000137193 PIM1 o--b
ENSG00000171033 PKIA o++a
ENSG00000143190 POU2F1 NonAssociatedWithProgression
ENSG00000213639 PPP1CB +-o
ENSG00000181929 PRKAG1 ---
ENSG00000159335 PTMS o--a
ENSG00000185236 RAB11B ---
ENSG00000175582 RAB6A o++b
ENSG00000017797 RALBP1 --o
ENSG00000167771 RCOR2 NonAssociatedWithProgression
ENSG00000132005 RFX1 ---
ENSG00000067900 ROCK1 o+o
ENSG00000125744 RTN2 o--a
ENSG00000133318 RTN3 o--a
ENSG00000170145 SIK2 o--a
ENSG00000080503 SMARCA2 NonAssociatedWithProgression
ENSG00000196792 STRN3 o+o
ENSG00000092201 SUPT16H o--a
ENSG00000141510 TP53 o--a
ENSG00000163462 TRIM46 -oo
ENSG00000119048 UBE2B o+-
ENSG00000105698 USF2 ---
ENSG00000128564 VGF NonAssociatedWithProgression
ENSG00000069329 VPS35 o-o
ENSG00000134308 YWHAQ o+-
ENSG00000165861 ZFYVE1 NonAssociatedWithProgression
ENSG00000125945 ZNF436 +o+
ENSG00000218891 ZNF579 o-o