PEACHi
GeneSet V$ALPHACP1_01 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
DownRegulated -3.3 0.03485 82.0 62.0 48.42
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000183044 ABAT o++a
ENSG00000132142 ACACA o--b
ENSG00000032219 ARID4A o-+
ENSG00000183475 ASB7 NonAssociatedWithProgression
ENSG00000066279 ASPM o+-
ENSG00000174437 ATP2A2 -o-
ENSG00000204256 BRD2 o--b
ENSG00000124596 C6orf130 o-o
ENSG00000143933 CALM2 o--a
ENSG00000138764 CCNG2 ---
ENSG00000111665 CDCA3 o--a
ENSG00000123975 CKS2 o--a
ENSG00000122705 CLTA +-o
ENSG00000088038 CNOT3 o--a
ENSG00000155368 DBI NonAssociatedWithProgression
ENSG00000132437 DDC -oo
ENSG00000149091 DGKZ --o
ENSG00000116133 DHCR24 NonAssociatedWithProgression
ENSG00000176124 DLEU1 -o-
ENSG00000231607 DLEU2 oo-
ENSG00000082458 DLG3 NonAssociatedWithProgression
ENSG00000090520 DNAJB11 NonAssociatedWithProgression
ENSG00000108176 DNAJC12 -+o
ENSG00000139318 DUSP6 NonAssociatedWithProgression
ENSG00000126767 ELK1 ---
ENSG00000105722 ERF ---
ENSG00000177731 FLII o--b
ENSG00000159131 GART NonAssociatedWithProgression
ENSG00000172354 GNB2 ---
ENSG00000132475 H3F3B o--b
ENSG00000114315 HES1 NonAssociatedWithProgression
ENSG00000159399 HK2 o--b
ENSG00000149084 HSD17B12 NonAssociatedWithProgression
ENSG00000143621 ILF2 o-o
ENSG00000169047 IRS1 o--b
ENSG00000008083 JARID2 o-o
ENSG00000077454 LRCH4 ---
ENSG00000157193 LRP8 o--a
ENSG00000073803 MAP3K13 o++a
ENSG00000103495 MAZ o--a
ENSG00000143995 MEIS1 o++b
ENSG00000204568 MRPS18B o--a
ENSG00000119013 NDUFB3 o-o
ENSG00000117650 NEK2 o--b
ENSG00000001167 NFYA NonAssociatedWithProgression
ENSG00000154146 NRGN --o
ENSG00000129535 NRL o-o
ENSG00000152782 PANK1 o++b
ENSG00000165494 PCF11 oo-
ENSG00000132646 PCNA -o-
ENSG00000189266 PNRC2 o+o
ENSG00000138032 PPM1B o-o
ENSG00000204569 PPP1R10 o--b
ENSG00000137509 PRCP ---
ENSG00000170325 PRDM10 o+o
ENSG00000130175 PRKCSH o--b
ENSG00000067606 PRKCZ ---
ENSG00000187514 PTMA o--b
ENSG00000182185 RAD51L1 ---
ENSG00000102317 RBM3 -o-
ENSG00000173933 RBM4 o--a
ENSG00000119729 RHOQ o+o
ENSG00000102218 RP2 o-o
ENSG00000197019 SERTAD1 ---
ENSG00000130766 SESN2 +-o
ENSG00000168066 SF1 o-o
ENSG00000183048 SLC25A10 ---
ENSG00000004864 SLC25A13 NonAssociatedWithProgression
ENSG00000148339 SLC25A25 ---
ENSG00000151729 SLC25A4 -oo
ENSG00000175387 SMAD2 NonAssociatedWithProgression
ENSG00000177427 SMCR7 ---
ENSG00000159140 SON NonAssociatedWithProgression
ENSG00000134243 SORT1 o-+
ENSG00000185591 SP1 o--a
ENSG00000167182 SP2 +oo
ENSG00000136158 SPRY2 o+o
ENSG00000157216 SSBP3 o--a
ENSG00000124356 STAMBP o--b
ENSG00000172660 TAF15 o--b
ENSG00000196781 TLE1 o--a
ENSG00000100284 TOM1 ---
ENSG00000170315 UBB ---
ENSG00000175063 UBE2C o-o
ENSG00000169764 UGP2 o--a
ENSG00000162607 USP1 o--b
ENSG00000143258 USP21 -o-
ENSG00000111667 USP5 ---
ENSG00000198382 UVRAG o++a
ENSG00000165280 VCP o+-
ENSG00000111237 VPS29 o+o
ENSG00000158195 WASF2 NonAssociatedWithProgression
ENSG00000108379 WNT3 o+o
ENSG00000082898 XPO1 o-o
ENSG00000205189 ZBTB10 NonAssociatedWithProgression
ENSG00000156599 ZDHHC5 o--b
ENSG00000186660 ZFP91 +-o