PEACHi
GeneSet Transmembrane transport of small molecules (Pathways_-_Reactome.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
AllGenesAssociatedWithProgression -2.8 0.01939 182.0 149.0 132.6
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000094914 AAAS o--a
ENSG00000135776 ABCB10 o++b
ENSG00000131269 ABCB7 o-o
ENSG00000197150 ABCB8 o-o
ENSG00000125257 ABCC4 o++a
ENSG00000114770 ABCC5 NonAssociatedWithProgression
ENSG00000101986 ABCD1 NonAssociatedWithProgression
ENSG00000117528 ABCD3 NonAssociatedWithProgression
ENSG00000160179 ABCG1 --o
ENSG00000138031 ADCY3 o-o
ENSG00000121281 ADCY7 -+o
ENSG00000165272 AQP3 o--b
ENSG00000131089 ARHGEF9 o--b
ENSG00000068650 ATP11A o+o
ENSG00000058063 ATP11B NonAssociatedWithProgression
ENSG00000101974 ATP11C o++b
ENSG00000163399 ATP1A1 o--a
ENSG00000143153 ATP1B1 -oo
ENSG00000069849 ATP1B3 o--b
ENSG00000174437 ATP2A2 -o-
ENSG00000074370 ATP2A3 o--b
ENSG00000070961 ATP2B1 +-o
ENSG00000157087 ATP2B2 o++b
ENSG00000058668 ATP2B4 o++b
ENSG00000017260 ATP2C1 oo-
ENSG00000033627 ATP6V0A1 ---
ENSG00000185344 ATP6V0A2 o-o
ENSG00000117410 ATP6V0B o--a
ENSG00000185883 ATP6V0C o--b
ENSG00000159720 ATP6V0D1 o--a
ENSG00000113732 ATP6V0E1 o--b
ENSG00000171130 ATP6V0E2 o--a
ENSG00000114573 ATP6V1A NonAssociatedWithProgression
ENSG00000147416 ATP6V1B2 o-o
ENSG00000155097 ATP6V1C1 o++b
ENSG00000143882 ATP6V1C2 ---
ENSG00000100554 ATP6V1D NonAssociatedWithProgression
ENSG00000131100 ATP6V1E1 NonAssociatedWithProgression
ENSG00000128524 ATP6V1F o--a
ENSG00000136888 ATP6V1G1 o+-
ENSG00000213760 ATP6V1G2 o++b
ENSG00000047249 ATP6V1H o+o
ENSG00000165240 ATP7A o++b
ENSG00000123191 ATP7B o++b
ENSG00000124406 ATP8A1 -+o
ENSG00000143515 ATP8B2 o-+
ENSG00000166377 ATP9B o--a
ENSG00000001626 CFTR o--b
ENSG00000047457 CP NonAssociatedWithProgression
ENSG00000071967 CYBRD1 NonAssociatedWithProgression
ENSG00000162769 FLVCR1 +-o
ENSG00000167996 FTH1 oo-
ENSG00000087086 FTL o--a
ENSG00000137731 FXYD2 o-+
ENSG00000141349 G6PC3 o--b
ENSG00000087460 GNAS NonAssociatedWithProgression
ENSG00000078369 GNB1 o--a
ENSG00000172354 GNB2 ---
ENSG00000114450 GNB4 -+o
ENSG00000069966 GNB5 -o-
ENSG00000242616 GNG10 o++b
ENSG00000186469 GNG2 o++b
ENSG00000168243 GNG4 o--a
ENSG00000174021 GNG5 o+o
ENSG00000156515 HK1 ---
ENSG00000159399 HK2 o--b
ENSG00000103415 HMOX2 o--b
ENSG00000090674 MCOLN1 ---
ENSG00000111581 NUP107 -+o
ENSG00000069248 NUP133 o+-
ENSG00000124789 NUP153 o+-
ENSG00000113569 NUP155 NonAssociatedWithProgression
ENSG00000030066 NUP160 NonAssociatedWithProgression
ENSG00000095319 NUP188 ---
ENSG00000155561 NUP205 -o-
ENSG00000132182 NUP210 o-o
ENSG00000126883 NUP214 NonAssociatedWithProgression
ENSG00000163002 NUP35 oo-
ENSG00000075188 NUP37 NonAssociatedWithProgression
ENSG00000093000 NUP50 NonAssociatedWithProgression
ENSG00000138750 NUP54 o-o
ENSG00000213024 NUP62 o--a
ENSG00000125450 NUP85 o--b
ENSG00000108559 NUP88 NonAssociatedWithProgression
ENSG00000102900 NUP93 o-o
ENSG00000110713 NUP98 o--a
ENSG00000139496 NUPL1 +-o
ENSG00000136243 NUPL2 o+-
ENSG00000162735 PEX19 --o
ENSG00000034693 PEX3 NonAssociatedWithProgression
ENSG00000196313 POM121 o--b
ENSG00000072062 PRKACA ---
ENSG00000142875 PRKACB o--b
ENSG00000108946 PRKAR1A o+-
ENSG00000188191 PRKAR1B NonAssociatedWithProgression
ENSG00000103769 RAB11A -o-
ENSG00000107560 RAB11FIP2 NonAssociatedWithProgression
ENSG00000101146 RAE1 -o-
ENSG00000153201 RANBP2 o+o
ENSG00000085415 SEH1L o-o
ENSG00000110911 SLC11A2 NonAssociatedWithProgression
ENSG00000064651 SLC12A2 o-o
ENSG00000113504 SLC12A7 o--b
ENSG00000141469 SLC14A1 -+o
ENSG00000139370 SLC15A4 NonAssociatedWithProgression
ENSG00000155380 SLC16A1 o--b
ENSG00000141526 SLC16A3 o-o
ENSG00000119899 SLC17A5 +o+
ENSG00000115902 SLC1A4 NonAssociatedWithProgression
ENSG00000105281 SLC1A5 o--b
ENSG00000144136 SLC20A1 o-o
ENSG00000168575 SLC20A2 o--b
ENSG00000197375 SLC22A5 o++b
ENSG00000089060 SLC24A6 o--a
ENSG00000183048 SLC25A10 ---
ENSG00000155850 SLC26A2 +o+
ENSG00000225697 SLC26A6 o--a
ENSG00000130304 SLC27A1 --o
ENSG00000112759 SLC29A1 o--b
ENSG00000174669 SLC29A2 ---
ENSG00000198246 SLC29A3 NonAssociatedWithProgression
ENSG00000117394 SLC2A1 o--b
ENSG00000133460 SLC2A11 o--a
ENSG00000146411 SLC2A12 o++a
ENSG00000151229 SLC2A13 -+o
ENSG00000059804 SLC2A3 NonAssociatedWithProgression
ENSG00000170385 SLC30A1 o-o
ENSG00000145740 SLC30A5 o+o
ENSG00000152683 SLC30A6 NonAssociatedWithProgression
ENSG00000162695 SLC30A7 o+o
ENSG00000169359 SLC33A1 o++b
ENSG00000164414 SLC35A1 NonAssociatedWithProgression
ENSG00000102100 SLC35A2 o-+
ENSG00000117620 SLC35A3 NonAssociatedWithProgression
ENSG00000157593 SLC35B2 o-o
ENSG00000205060 SLC35B4 NonAssociatedWithProgression
ENSG00000181830 SLC35C1 ---
ENSG00000116704 SLC35D1 o++b
ENSG00000123643 SLC36A1 +o+
ENSG00000111371 SLC38A1 +-o
ENSG00000134294 SLC38A2 oo-
ENSG00000017483 SLC38A5 ---
ENSG00000143570 SLC39A1 o-o
ENSG00000196950 SLC39A10 o--b
ENSG00000141873 SLC39A3 ---
ENSG00000147804 SLC39A4 ---
ENSG00000141424 SLC39A6 o--a
ENSG00000112473 SLC39A7 o-o
ENSG00000138821 SLC39A8 o++b
ENSG00000168003 SLC3A2 +-o
ENSG00000138449 SLC40A1 +o+
ENSG00000133065 SLC41A1 --o
ENSG00000149150 SLC43A1 o--b
ENSG00000070214 SLC44A1 o++a
ENSG00000129353 SLC44A2 NonAssociatedWithProgression
ENSG00000137968 SLC44A5 o++b
ENSG00000164889 SLC4A2 -o-
ENSG00000080493 SLC4A4 -+o
ENSG00000033867 SLC4A7 oo+
ENSG00000113073 SLC4A9 oo+
ENSG00000198743 SLC5A3 NonAssociatedWithProgression
ENSG00000138074 SLC5A6 ---
ENSG00000072041 SLC6A15 +-o
ENSG00000163817 SLC6A20 NonAssociatedWithProgression
ENSG00000131389 SLC6A6 o+o
ENSG00000139514 SLC7A1 +-o
ENSG00000151012 SLC7A11 +oo
ENSG00000165349 SLC7A3 o--b
ENSG00000103257 SLC7A5 o--b
ENSG00000103064 SLC7A6 o--b
ENSG00000155465 SLC7A7 +o+
ENSG00000090020 SLC9A1 o--b
ENSG00000198689 SLC9A6 NonAssociatedWithProgression
ENSG00000065923 SLC9A7 -+o
ENSG00000197818 SLC9A8 o--b
ENSG00000181804 SLC9A9 o++b
ENSG00000084453 SLCO1A2 o++b
ENSG00000174640 SLCO2A1 +o+
ENSG00000176463 SLCO3A1 o--a
ENSG00000101187 SLCO4A1 NonAssociatedWithProgression
ENSG00000072274 TFRC o++a
ENSG00000047410 TPR o+-