PEACHi
GeneSet TRANSCRIPTION_FACTOR_ACTIVITY (GO_-_Molecular_Function.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--b -4.0 0.01502 149.0 37.0 20.59
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000108270 AATF o--b
ENSG00000106624 AEBP1 ---
ENSG00000172493 AFF1 +-o
ENSG00000072364 AFF4 NonAssociatedWithProgression
ENSG00000032219 ARID4A o-+
ENSG00000143437 ARNT o++b
ENSG00000123268 ATF1 o--b
ENSG00000162772 ATF3 +-o
ENSG00000128272 ATF4 o--b
ENSG00000118217 ATF6 o--a
ENSG00000156273 BACH1 +oo
ENSG00000156127 BATF o++b
ENSG00000123685 BATF3 o--a
ENSG00000106245 BUD31 -o-
ENSG00000067955 CBFB o--a
ENSG00000110395 CBL o--b
ENSG00000151014 CCRN4L o--a
ENSG00000164442 CITED2 o++b
ENSG00000169714 CNBP o--a
ENSG00000198791 CNOT7 --o
ENSG00000118260 CREB1 o+-
ENSG00000146592 CREB5 +oo
ENSG00000005339 CREBBP NonAssociatedWithProgression
ENSG00000111269 CREBL2 o++b
ENSG00000102974 CTCF o--b
ENSG00000115844 DLX2 NonAssociatedWithProgression
ENSG00000175550 DRAP1 o--b
ENSG00000101412 E2F1 o--b
ENSG00000112242 E2F3 NonAssociatedWithProgression
ENSG00000205250 E2F4 ---
ENSG00000107223 EDF1 o--b
ENSG00000120738 EGR1 NonAssociatedWithProgression
ENSG00000120690 ELF1 o--b
ENSG00000126767 ELK1 ---
ENSG00000074800 ENO1 o--b
ENSG00000100393 EP300 o++b
ENSG00000244405 ETV5 +-o
ENSG00000139083 ETV6 o++a
ENSG00000183900 FOXD1 o++b
ENSG00000170802 FOXN2 -o-
ENSG00000118689 FOXO3 NonAssociatedWithProgression
ENSG00000184481 FOXO4 --o
ENSG00000162613 FUBP1 +oo
ENSG00000154727 GABPA o--b
ENSG00000143458 GABPB2 NonAssociatedWithProgression
ENSG00000007237 GAS7 ---
ENSG00000107485 GATA3 o+o
ENSG00000106571 GLI3 o++a
ENSG00000180353 HCLS1 o--a
ENSG00000116478 HDAC1 ---
ENSG00000196591 HDAC2 NonAssociatedWithProgression
ENSG00000144485 HES6 ---
ENSG00000164683 HEY1 +o+
ENSG00000100644 HIF1A NonAssociatedWithProgression
ENSG00000100084 HIRA ---
ENSG00000137309 HMGA1 o--b
ENSG00000164104 HMGB2 o--b
ENSG00000185122 HSF1 ---
ENSG00000025156 HSF2 o-o
ENSG00000161405 IKZF3 -o-
ENSG00000213928 IRF9 NonAssociatedWithProgression
ENSG00000177606 JUN NonAssociatedWithProgression
ENSG00000155090 KLF10 o--b
ENSG00000118922 KLF12 o+o
ENSG00000118263 KLF7 oo-
ENSG00000143013 LMO4 -+o
ENSG00000099949 LZTR1 o++b
ENSG00000125952 MAX NonAssociatedWithProgression
ENSG00000141644 MBD1 o+o
ENSG00000070444 MNT NonAssociatedWithProgression
ENSG00000148450 MSRB2 o--a
ENSG00000188786 MTF1 o+-
ENSG00000059728 MXD1 NonAssociatedWithProgression
ENSG00000101057 MYBL2 o--b
ENSG00000136997 MYC o--b
ENSG00000104177 MYEF2 NonAssociatedWithProgression
ENSG00000085274 MYNN NonAssociatedWithProgression
ENSG00000102908 NFAT5 o--b
ENSG00000131196 NFATC1 o--b
ENSG00000082641 NFE2L1 NonAssociatedWithProgression
ENSG00000116044 NFE2L2 o--b
ENSG00000050344 NFE2L3 NonAssociatedWithProgression
ENSG00000147862 NFIB NonAssociatedWithProgression
ENSG00000165030 NFIL3 -+o
ENSG00000109320 NFKB1 o++a
ENSG00000077150 NFKB2 NonAssociatedWithProgression
ENSG00000086102 NFX1 NonAssociatedWithProgression
ENSG00000001167 NFYA NonAssociatedWithProgression
ENSG00000120837 NFYB o-o
ENSG00000066136 NFYC NonAssociatedWithProgression
ENSG00000011052 NME2 NonAssociatedWithProgression
ENSG00000130751 NPAS1 NonAssociatedWithProgression
ENSG00000170485 NPAS2 o-+
ENSG00000177463 NR2C2 NonAssociatedWithProgression
ENSG00000113580 NR3C1 o--a
ENSG00000170515 PA2G4 NonAssociatedWithProgression
ENSG00000007372 PAX6 NonAssociatedWithProgression
ENSG00000056661 PCGF2 ---
ENSG00000156374 PCGF6 o+o
ENSG00000113068 PFDN1 o-o
ENSG00000112511 PHF1 o--b
ENSG00000100410 PHF5A o--b
ENSG00000116793 PHTF1 o+o
ENSG00000181690 PLAG1 oo-
ENSG00000126003 PLAGL2 +-o
ENSG00000143190 POU2F1 NonAssociatedWithProgression
ENSG00000152192 POU4F1 oo+
ENSG00000164611 PTTG1 NonAssociatedWithProgression
ENSG00000185129 PURA ---
ENSG00000139687 RB1 NonAssociatedWithProgression
ENSG00000168214 RBPJ o--b
ENSG00000159200 RCAN1 NonAssociatedWithProgression
ENSG00000173039 RELA o--a
ENSG00000104856 RELB o--b
ENSG00000132005 RFX1 ---
ENSG00000080298 RFX3 NonAssociatedWithProgression
ENSG00000117000 RLF o-o
ENSG00000063978 RNF4 NonAssociatedWithProgression
ENSG00000198963 RORB NonAssociatedWithProgression
ENSG00000159216 RUNX1 o--b
ENSG00000020633 RUNX3 o--b
ENSG00000186350 RXRA ---
ENSG00000171222 SCAND1 o--a
ENSG00000010803 SCMH1 NonAssociatedWithProgression
ENSG00000047634 SCML1 NonAssociatedWithProgression
ENSG00000102098 SCML2 NonAssociatedWithProgression
ENSG00000125520 SLC2A4RG o-o
ENSG00000127616 SMARCA4 o--b
ENSG00000104976 SNAPC2 o--a
ENSG00000165684 SNAPC4 o--b
ENSG00000174446 SNAPC5 o++a
ENSG00000103326 SOLH ---
ENSG00000124766 SOX4 +oo
ENSG00000185591 SP1 o--a
ENSG00000072310 SREBF1 o--a
ENSG00000115415 STAT1 oo+
ENSG00000168610 STAT3 o--b
ENSG00000126561 STAT5A o-o
ENSG00000173757 STAT5B ---
ENSG00000166888 STAT6 o--b
ENSG00000213246 SUPT4H1 o--a
ENSG00000109111 SUPT6H o--b
ENSG00000197780 TAF13 o+o
ENSG00000148835 TAF5 o--a
ENSG00000135801 TAF5L +-o
ENSG00000120948 TARDBP o--a
ENSG00000137310 TCF19 o-+
ENSG00000141002 TCF25 o-o
ENSG00000101190 TCFL5 o--a
ENSG00000108064 TFAM NonAssociatedWithProgression
ENSG00000087510 TFAP2C o--a
ENSG00000090447 TFAP4 o--b
ENSG00000198176 TFDP1 -o-
ENSG00000177426 TGIF1 o+o
ENSG00000126351 THRA --o
ENSG00000141510 TP53 o--a
ENSG00000124496 TRERF1 --o
ENSG00000121060 TRIM25 NonAssociatedWithProgression
ENSG00000130726 TRIM28 o--a
ENSG00000157514 TSC22D3 +-o
ENSG00000118900 UBN1 o--b
ENSG00000153560 UBP1 o-+
ENSG00000034063 UHRF1 o--b
ENSG00000105698 USF2 ---
ENSG00000141968 VAV1 o--a
ENSG00000100219 XBP1 -+o
ENSG00000065978 YBX1 o--a
ENSG00000127337 YEATS4 o-o
ENSG00000100811 YY1 o--b
ENSG00000116809 ZBTB17 o--b
ENSG00000204859 ZBTB48 o--b
ENSG00000148516 ZEB1 oo-
ENSG00000140836 ZFHX3 o++a
ENSG00000152518 ZFP36L2 NonAssociatedWithProgression
ENSG00000165156 ZHX1 NonAssociatedWithProgression
ENSG00000178764 ZHX2 NonAssociatedWithProgression
ENSG00000174306 ZHX3 ---
ENSG00000125846 ZNF133 o++a
ENSG00000196387 ZNF140 NonAssociatedWithProgression
ENSG00000115568 ZNF142 o+-
ENSG00000204920 ZNF155 o--a
ENSG00000103343 ZNF174 o++b
ENSG00000136870 ZNF189 +o+
ENSG00000186448 ZNF197 +o+
ENSG00000166261 ZNF202 ---
ENSG00000171940 ZNF217 o--b
ENSG00000165804 ZNF219 ---
ENSG00000179456 ZNF238 o-o
ENSG00000006194 ZNF263 o--a
ENSG00000171606 ZNF274 o--a
ENSG00000165244 ZNF367 NonAssociatedWithProgression
ENSG00000124459 ZNF45 o+o
ENSG00000105750 ZNF85 o+o
ENSG00000132485 ZRANB2 o-+