PEACHi
GeneSet TRANSCRIPTION_COACTIVATOR_ACTIVITY (GO_-_Molecular_Function.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--b -3.2 0.03238 59.0 17.0 8.15
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000110711 AIP o--a
ENSG00000100823 APEX1 NonAssociatedWithProgression
ENSG00000143437 ARNT o++b
ENSG00000115966 ATF2 NonAssociatedWithProgression
ENSG00000118217 ATF6 o--a
ENSG00000142867 BCL10 o+o
ENSG00000112983 BRD8 o-+
ENSG00000012822 CALCOCO1 --o
ENSG00000121022 COPS5 NonAssociatedWithProgression
ENSG00000005339 CREBBP NonAssociatedWithProgression
ENSG00000135144 DTX1 o--b
ENSG00000122882 ECD +-o
ENSG00000107223 EDF1 o--b
ENSG00000100393 EP300 o++b
ENSG00000154727 GABPA o--b
ENSG00000125651 GTF2F1 o--a
ENSG00000172534 HCFC1 o--b
ENSG00000137309 HMGA1 o--b
ENSG00000025156 HSF2 o-o
ENSG00000109854 HTATIP2 o+-
ENSG00000152409 JMY o--a
ENSG00000171223 JUNB ---
ENSG00000118263 KLF7 oo-
ENSG00000161021 MAML1 o--b
ENSG00000125952 MAX NonAssociatedWithProgression
ENSG00000175221 MED16 ---
ENSG00000152944 MED21 -o-
ENSG00000112282 MED23 NonAssociatedWithProgression
ENSG00000105085 MED26 o--a
ENSG00000160563 MED27 o--a
ENSG00000133997 MED6 NonAssociatedWithProgression
ENSG00000155868 MED7 NonAssociatedWithProgression
ENSG00000186260 MKL2 +o+
ENSG00000155229 MMS19 o--b
ENSG00000070444 MNT NonAssociatedWithProgression
ENSG00000188786 MTF1 o+-
ENSG00000104177 MYEF2 NonAssociatedWithProgression
ENSG00000198646 NCOA6 o--b
ENSG00000050344 NFE2L3 NonAssociatedWithProgression
ENSG00000077150 NFKB2 NonAssociatedWithProgression
ENSG00000104825 NFKBIB ---
ENSG00000066136 NFYC NonAssociatedWithProgression
ENSG00000181163 NPM1 o--b
ENSG00000177463 NR2C2 NonAssociatedWithProgression
ENSG00000180530 NRIP1 o++a
ENSG00000166228 PCBD1 o++a
ENSG00000160783 PMF1 o-o
ENSG00000110777 POU2AF1 oo+
ENSG00000155846 PPARGC1B NonAssociatedWithProgression
ENSG00000102103 PQBP1 ---
ENSG00000101161 PRPF6 o-o
ENSG00000165916 PSMC3 o-o
ENSG00000239306 RBM14 o--a
ENSG00000133111 RFXAP NonAssociatedWithProgression
ENSG00000013561 RNF14 NonAssociatedWithProgression
ENSG00000186350 RXRA ---
ENSG00000204231 RXRB NonAssociatedWithProgression
ENSG00000080503 SMARCA2 NonAssociatedWithProgression
ENSG00000127616 SMARCA4 o--b
ENSG00000173473 SMARCC1 o--a
ENSG00000139613 SMARCC2 --o
ENSG00000066117 SMARCD1 NonAssociatedWithProgression
ENSG00000108604 SMARCD2 o--b
ENSG00000082014 SMARCD3 +oo
ENSG00000073584 SMARCE1 -oo
ENSG00000100603 SNW1 NonAssociatedWithProgression
ENSG00000105866 SP4 NonAssociatedWithProgression
ENSG00000080603 SRCAP o--b
ENSG00000113387 SUB1 +-o
ENSG00000130699 TAF4 o++b
ENSG00000178913 TAF7 o--b
ENSG00000085231 TAF9 o+o
ENSG00000028839 TBPL1 NonAssociatedWithProgression
ENSG00000113649 TCERG1 o--a
ENSG00000090447 TFAP4 o--b
ENSG00000198176 TFDP1 -o-
ENSG00000122779 TRIM24 NonAssociatedWithProgression
ENSG00000100815 TRIP11 o++b
ENSG00000015153 YAF2 -oo
ENSG00000100811 YY1 o--b
ENSG00000148516 ZEB1 oo-
ENSG00000005889 ZFX o--b
ENSG00000122515 ZMIZ2 o--b